Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f20
         (629 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011431-1|AAR99089.1| 1120|Drosophila melanogaster RH64806p pro...    29   5.2  
AE014296-1219|AAF50588.3| 1120|Drosophila melanogaster CG32381-P...    29   5.2  
AY070583-1|AAL48054.1|  262|Drosophila melanogaster RE68626p pro...    28   9.1  

>BT011431-1|AAR99089.1| 1120|Drosophila melanogaster RH64806p
           protein.
          Length = 1120

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 405 VLHQIAQNTIVAARHCRIGVFVQQXKLRRASHLD 304
           +LHQ+A  + ++  HC +  +V   KL R++ LD
Sbjct: 368 ILHQLAVQSDLSDLHCAMARYVAAAKLNRSTPLD 401


>AE014296-1219|AAF50588.3| 1120|Drosophila melanogaster CG32381-PA
           protein.
          Length = 1120

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 405 VLHQIAQNTIVAARHCRIGVFVQQXKLRRASHLD 304
           +LHQ+A  + ++  HC +  +V   KL R++ LD
Sbjct: 368 ILHQLAVQSDLSDLHCAMARYVAAAKLNRSTPLD 401


>AY070583-1|AAL48054.1|  262|Drosophila melanogaster RE68626p
           protein.
          Length = 262

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 393 IAQNTIVAARHCRIGVFVQQXKLRRASHLDNMG 295
           I ++T+VAA HC +G  V +  +R  S L N G
Sbjct: 66  INEDTVVAAAHCLVGRKVSKVFVRLGSTLYNEG 98


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,096,567
Number of Sequences: 53049
Number of extensions: 385693
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)