Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f19
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        26   0.22 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.8  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 110 HTLVGHEDWVRGLDVLEVDNDTIIV 184
           H LVG E   +G+  +E+++DT+ V
Sbjct: 132 HNLVGREGCKKGVCTMEINSDTMCV 156


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 388 RTIKTIRMPLYPIDPGFMTGKHCLKFHRPKIVICMEHFFLNLNQ 257
           ++ K +  P   + P  +     LK   PK+ +CM++  +N +Q
Sbjct: 580 KSAKPMLKPWQRVLPDGVFVAFLLKHIVPKLQLCMQNLVINPHQ 623


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 284 HAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFD 382
           +++DN  S  ++  L   E   Y   W+  SFD
Sbjct: 205 YSFDNQCSGTIDWALPKQEDCFYQEGWNGQSFD 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,917
Number of Sequences: 336
Number of extensions: 3494
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)