Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f19
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 76 5e-15
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 41 1e-04
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 38 0.002
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 33 0.025
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 32 0.059
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 32 0.077
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 32 0.077
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 31 0.14
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 31 0.14
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 31 0.14
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.24
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 30 0.24
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 30 0.31
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 29 0.41
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 0.55
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 29 0.72
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 29 0.72
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.72
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 28 0.95
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 0.95
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 28 0.95
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 28 1.3
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 2.2
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 27 2.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 2.9
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 2.9
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 2.9
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 3.8
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 3.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 3.8
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 6.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 6.7
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 8.9
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 8.9
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 25 8.9
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 8.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 8.9
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.9
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 75.8 bits (178), Expect = 5e-15
Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 116 LVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFH--- 286
L GH DWVR L + T +AS SQD YIRLW I ++ E + E V
Sbjct: 187 LRGHLDWVRTLSFKKTSGSTATLASGSQDRYIRLWNISLWGSEDEKVSEEFFESVLSNKP 246
Query: 287 AYDNLWSVKL----EAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEP 454
L + L +A+L GHE WV V WH PTK+ +LSSS D ++I+WEP
Sbjct: 247 VRFTLGKIDLKIVFDALLMGHEDWVMSVDWH------PTKE---MILSSSADSSMIVWEP 297
Query: 455 DSSS 466
D+++
Sbjct: 298 DTNT 301
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 35 NKPLLLCALDDHKIHIF-VGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYI 211
N LL A D + ++ + Y R HTL GHED V GL+ +D I+AS+S D +
Sbjct: 293 NDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLE--WSPHDEPILASSSTDRRV 350
Query: 212 RLWRIQKV 235
+W ++K+
Sbjct: 351 CIWDLEKI 358
Score = 32.7 bits (71), Expect = 0.044
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 326 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
L GHE VYG++W P+ +P+ L SSS D+ + IW+
Sbjct: 321 LEGHEDEVYGLEWSPHD------EPI--LASSSTDRRVCIWD 354
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 158 EVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVL--A 331
E+ +A+A +D IR+W++ + + E+ L + + + + E VL
Sbjct: 193 EISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFTPSSIFEPEPVLECV 252
Query: 332 GHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSST 469
GH A V + W F LL+SS D+T+ +W P S+ +
Sbjct: 253 GHNAEVLSISWSKNDF----------LLTSSADRTVRLWHPKSTKS 288
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 33.5 bits (73), Expect = 0.025
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 38 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRL 217
+PL + DD+K++++ + +L GH D+VR V ++ + S S D IR+
Sbjct: 65 QPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVR---VCTFHHEYPWILSCSDDQTIRI 121
Query: 218 WRIQ 229
W Q
Sbjct: 122 WNWQ 125
Score = 32.3 bits (70), Expect = 0.059
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Frame = +2
Query: 41 PLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
P +L DD I I+ + + L GH +V D I+ SAS D +R+W
Sbjct: 108 PWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVM-CAAFHPSEDLIV--SASLDQTVRVW 164
Query: 221 RIQKVKAQPESKL-IKVEEKVFHAYDNL-------WSVKLEAVLAGHEAWVYGVQWHP 370
I ++ + + + + +E+++ A++++ ++ VL GH+ V +HP
Sbjct: 165 DISGLRMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGHDRGVNWCAFHP 222
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.059
Identities = 25/56 (44%), Positives = 27/56 (48%)
Frame = +2
Query: 281 FHAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 448
F A N W LE LAGH W V W P G TK Y L S+S DK + IW
Sbjct: 188 FDAGVNNWI--LEDTLAGHVDWTRDVAWAPSV--GLTK--TY-LASASQDKNVFIW 236
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 113 TLVGHEDWVRGLD-VLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEK 277
TL GH DW R + V +ASASQD + +W K P K EEK
Sbjct: 200 TLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIW--TKEGDGPWQKTPLTEEK 253
Score = 28.7 bits (61), Expect = 0.72
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 8 LHAQILPCANKPLLLCALDDHKIHIFVGEDYHRA--HTLVGHEDWVRGLDVLEVDNDTII 181
+H IL K L C+ D I +F E+ + TL GH V L TI+
Sbjct: 12 IHDAILDYYGKRLATCS-SDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTIL 70
Query: 182 VASASQDTYIRLWR 223
ASAS D ++ +WR
Sbjct: 71 -ASASYDGHVIVWR 83
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.9 bits (69), Expect = 0.077
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Frame = +2
Query: 47 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
L+ +D +I ++ + GHE + LD N IV S S D RLW +
Sbjct: 375 LVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSH--NGRFIV-SGSGDRTARLWDV 431
Query: 227 QK----VKAQPESKLIKVE---EKVFHAYDNL------WSVKLEAV--LAGHEAWVYGVQ 361
+ +K + E+ + + F A +L WSV V L GH+ VY +
Sbjct: 432 ETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIA 491
Query: 362 WHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
+ P S LLS SLDKT+ +WE
Sbjct: 492 FSPDSSI---------LLSGSLDKTIKVWE 512
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 31.9 bits (69), Expect = 0.077
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +2
Query: 89 GEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKV 268
G D +HTL GH++ V GL + + AS S D R+W ++ + I
Sbjct: 342 GSDKIVSHTLSGHKNLVSGLSA--SPENPYMFASVSHDNTCRVWDVRATSGSIYT--ISR 397
Query: 269 EEKVFHAYDNLWSV 310
EK +D L++V
Sbjct: 398 AEKTGSQWDKLFAV 411
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 110 HTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
HTL+GH D VR + I+ S S D+ IR+WR+
Sbjct: 501 HTLIGHTDSVR-----TISGYGDILVSGSYDSSIRIWRV 534
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 140 RGLDVLEVDNDTIIVASASQDTYIRLW 220
R ++ ++V D I+ASASQD I+LW
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIKLW 492
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 116 LVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
L GH D V LD E D + +A+ ++D +RLW +
Sbjct: 360 LEGHTDIVLTLDSSE---DGVWLATGAKDNTVRLWNL 393
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 311 KLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
KL A GH++WV V + + D YR+ S LD+ L++W+
Sbjct: 397 KLVARCQGHKSWVTDVIFDAWRCDDDN----YRIASVGLDRKLLLWD 439
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.24
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Frame = +2
Query: 47 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
L ++D +I I+ L GHE + LD + D T++ S S D + LW +
Sbjct: 349 LATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSK-DGKTLV--SGSGDRTVCLWDV 405
Query: 227 QK---------------VKAQPESKLIKVE--EKVFHAYDNLWSVKLEAVLAGHEAWVYG 355
+ V P+ + I +KV + + S L L GHE VY
Sbjct: 406 EAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTS--SGTLVEQLHGHEESVYS 463
Query: 356 VQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
V + P DG L+S SLD T+ +WE
Sbjct: 464 VAFSP---DGKY------LVSGSLDNTIKLWE 486
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.24
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 35 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 214
NK + + D I I+ + TL GH RG+ ++ + +ASAS D IR
Sbjct: 65 NKRWIATSSSDGTIKIWSALTFRLECTLFGH---YRGISQVKWATGSKYLASASDDKTIR 121
Query: 215 LWRIQK 232
+W +K
Sbjct: 122 IWDFEK 127
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 122 GHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHAYD 295
GH+ V +DV D +T + SAS D IRLW ++ Q L+ V V A+D
Sbjct: 110 GHKQTVTSIDVSPAD-ETFL--SASLDNTIRLWDLRSPNCQ---GLLNVSSPVVAAFD 161
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.41
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 65 DHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQ 244
DH I + TL+GH D+V+ L +LE + ++ S S D + +W V +Q
Sbjct: 111 DHTIKKWNVSTGECVETLIGHTDYVKCLLLLEEEG---LLLSGSTDASLIVW---DVSSQ 164
Query: 245 PESKLIKV 268
P L K+
Sbjct: 165 PSRLLYKL 172
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -3
Query: 202 ILRSRRYDNCVVINFQHVKSPNPVFVSNQSMRSVIVLTDEYMYFVV 65
++++ RYDN + + + SP +F+ N+++ S + D Y Y VV
Sbjct: 373 LVQALRYDNPISSDERFQPSPLALFLVNRAISSPSIGNDLYWYLVV 418
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 28.7 bits (61), Expect = 0.72
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +2
Query: 14 AQILPCANKPLLLCALDDHKIHIF----VGEDYHRA-HTLVGHEDWV-------RGLDVL 157
A+ P + +L+ D+ +H++ + ++ RA H GH D V RG DV
Sbjct: 461 ARFTPFGDGVILMPQRGDNSVHMYDCRNLDKEGPRAVHRFAGHTDQVKEFLWRCRGEDVF 520
Query: 158 EVDNDTIIVASASQDTYIRLWRI 226
+ D + + S+D ++RLW I
Sbjct: 521 DRDLRDFQLITWSKDHHVRLWPI 543
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.72
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 110 HTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
H L GH+ V L V E D V + S D+ IRLW
Sbjct: 283 HVLSGHKSTVASLAVQEFDPQ---VVTGSMDSTIRLW 316
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 28.7 bits (61), Expect = 0.72
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 65 DHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
D I ++ + TL GH+D + G+D L + V+ +D RLW+I
Sbjct: 271 DRSIKVWSLDQMSYIETLFGHQDVIFGVDALARER---CVSVGGRDRTSRLWKI 321
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 28.3 bits (60), Expect = 0.95
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 143 GLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEK 277
G D+ D+ I ++SAS DT+ + R K + QP K K EK
Sbjct: 242 GGDLTTEDDFDIALSSASADTFKKGSRSTKSRPQPNPKRQKKNEK 286
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 0.95
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 314 LEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 448
L A L GH WV + P + D LLS S DK++I+W
Sbjct: 7 LRATLEGHSGWVTSLSTAPENPD--------ILLSGSRDKSIILW 43
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 113 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
TL GH WV L + D I+ S S+D I LW +
Sbjct: 10 TLEGHSGWVTSLSTAPENPD--ILLSGSRDKSIILWNL 45
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 146 LDVLEVDNDTIIVASASQDTYIRLWRIQ-KVKAQPESKLIK 265
++ E D+ ++A Q++YIRLW I+ K+ P+S ++
Sbjct: 327 MNCAEFSPDSTMIACGFQESYIRLWSIKADKKSLPKSTSVE 367
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKV 235
R HTL GHED V + ++ I+AS S D +W + ++
Sbjct: 317 RLHTLEGHEDIVTKISF--SPHEEPILASTSADRRTLVWDLSRI 358
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 305 SVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 448
S K++ L GHE V+ V W P DG R+ S DK + IW
Sbjct: 462 SKKMKFDLPGHEDQVFAVDWSP---DG------QRVASGGADKAVRIW 500
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 299 LWSVKLEAVL---AGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
+W+VKL +L +GH A + V+W ++ + SSS DKT+ IW+
Sbjct: 253 IWNVKLRTLLFTLSGHTAPITCVRWGGQNW----------IYSSSYDKTIRIWD 296
Score = 27.1 bits (57), Expect = 2.2
Identities = 25/90 (27%), Positives = 45/90 (50%)
Frame = +2
Query: 65 DHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQ 244
D + ++ G+ TL GH V + D+ ++ S+SQDT +++W ++ K +
Sbjct: 410 DSSVRLWDGKTGKFLATLRGH---VAAVYQCAWSTDSRLLVSSSQDTTLKVWDVRSKKMK 466
Query: 245 PESKLIKVEEKVFHAYDNLWSVKLEAVLAG 334
+ L E++VF A D WS + V +G
Sbjct: 467 FD--LPGHEDQVF-AVD--WSPDGQRVASG 491
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 320 AVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSS 466
A + GH WV V W P D + + S+D T+ W+P S
Sbjct: 171 ATMKGHTNWVSCVAWAP---DASI------IATGSMDNTIRFWDPKKGS 210
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 329 AGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEP 454
AGH A + + W +F LLSSS+DKT +W P
Sbjct: 306 AGHTADILDLSWSRNNF----------LLSSSMDKTARLWHP 337
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 65 DHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
D KI I+ E TL GH + V + + + ++ ASA DT +R+W
Sbjct: 638 DAKIRIWNLESGELLQTLHGHSNLV---SQVTFNQNILVSASAPPDTSLRVW 686
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 122 GHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWR 223
GHED V L EV ++ I+ S S D +R W+
Sbjct: 389 GHEDCVWELFCHEVKDNNPILLSLSSDGTVRGWK 422
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 113 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
+L GH D+V L + D+ I A+ S DT +RLW +
Sbjct: 369 SLKGHSDYVSCLAI----QDSFI-ATGSMDTTVRLWNL 401
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 224 IQKVKAQPESKLIKV--EEKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHP 370
++ V P S L+ + K+ YD L ++ L GH AW++ V ++P
Sbjct: 190 VRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQV-GQLRGHAAWIFAVAFNP 239
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 353 GVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSS 463
G Y FDG T VY + + I W PDSS
Sbjct: 208 GADGKVYVFDGKTGDQVYEIDAHKGSIFSISWSPDSS 244
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.8
Identities = 27/102 (26%), Positives = 48/102 (47%)
Frame = +2
Query: 146 LDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAV 325
L +L+ ND +++ +AS D + W I S L+ + F ++ SVK +
Sbjct: 121 LTILKFSNDGMVLFTASNDGDVFAWLI--------STLVD-QNSTFETSNS--SVKAISH 169
Query: 326 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
+GH+ + ++ P GP RL ++S D T+ IW+
Sbjct: 170 FSGHKRSIVSMEIGP----GPIVSG--RLYTASEDNTIRIWD 205
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 26 PCANKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDT 205
P +KP L+ A DD+ I ++ + L GH + + I+ S S+D
Sbjct: 194 PAGDKPYLITAGDDNLIKVWDYQTKACVRILEGH---TNNVSFAFFHSKFPIIISGSEDG 250
Query: 206 YIRLW 220
+++W
Sbjct: 251 TVKIW 255
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +2
Query: 71 KIHIFVGEDYHRAHTLVGHEDWVRGLD------VLEVDNDTIIVASASQDTYIRLWRIQK 232
++ ++ ++ GH D V GLD + D++ + +A+ + D + LW+ +
Sbjct: 195 QVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAADNTVCLWKASQ 254
Query: 233 VK--AQPESKLIKVEEKVFH 286
+ E L +V FH
Sbjct: 255 STPLLRLEGHLARVGRVAFH 274
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 65 DHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
D I I+ + H +H L GH+D + L + D + S S D +R++ ++
Sbjct: 198 DGAIKIWDLRNNHCSHVLKGHKDIITS---LAISKDGSSLLSNSMDNTVRIFDVK 249
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 6.7
Identities = 26/101 (25%), Positives = 38/101 (37%)
Frame = +2
Query: 317 EAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTDXXXXXXXX 496
E L GHE V ++P F K V L D++L IW SS+
Sbjct: 263 EINLIGHEGPVEVTAFNPKLFRDKNDKLVCILACGGQDRSLSIW---SSALPRPLLSCQN 319
Query: 497 XXXXXXXXXXXXXXSRFGPEGMSFLGHGYNGSFHIWTFDKE 619
+ P+G+S Y+G+ + TF+KE
Sbjct: 320 VFQKSIGDVC------WSPDGLSLFLCSYDGNVLVCTFEKE 354
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 116 EYALCDSPHRRIYVFCGHPVHK 51
+ +CD R ++ CGH VH+
Sbjct: 691 DQGICDPNDRFVHFECGHSVHE 712
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 131 LRVQPEYALCDSPHRRIYVFCG 66
+ ++PEY L D +YV CG
Sbjct: 114 MEIKPEYLLPDRHINEVYVSCG 135
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 337 MTGKHCLKFHRPKI 296
+TG H LK HRP I
Sbjct: 3 LTGAHMLKIHRPSI 16
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
R L GH D V L + V N I+AS S D IRLW +
Sbjct: 265 RQVVLSGHSDGVMCLQL--VRN---ILASGSYDATIRLWNL 300
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 71 KIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRI 226
KI++ ++ T GHEDW + ++ +++ A D + LW +
Sbjct: 131 KIYLIRISNFQIVATWTGHEDWP---ILFPFKDEALLIPVAYSDGSVSLWSV 179
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 392 KKPVYRLLSSSLDKTLIIWEPDSSS 466
K P L ++ DKTL +WE + SS
Sbjct: 231 KNPTSELPTNYSDKTLTLWENELSS 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,555
Number of Sequences: 5004
Number of extensions: 57445
Number of successful extensions: 250
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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