Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f19
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 60 1e-09
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 37 0.010
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 37 0.010
AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical ... 36 0.018
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 34 0.072
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 34 0.095
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 33 0.17
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 33 0.17
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 32 0.29
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 32 0.29
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 32 0.38
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 31 0.67
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 31 0.67
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 29 2.7
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82271-5|CAI46599.1| 378|Caenorhabditis elegans Hypothetical pr... 29 3.6
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 29 3.6
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL132904-1|CAC35832.2| 385|Caenorhabditis elegans Hypothetical ... 28 4.7
AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeri... 28 4.7
AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical ... 28 4.7
Z83106-2|CAB05494.1| 321|Caenorhabditis elegans Hypothetical pr... 28 6.2
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 27 8.2
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 60.1 bits (139), Expect = 1e-09
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Frame = +2
Query: 92 EDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVE 271
+ + R ++ GH DW+ + + D ++VASA QDTY+RLW I+ + +S+ I+ +
Sbjct: 195 KSFSRLISVAGHTDWIHSI-AFNDNPDHLLVASAGQDTYVRLWAIEP-ETDEKSENIRED 252
Query: 272 EKV-----FHAYDNLWSVKL-------EAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLL 415
+ NL+S+ AV+ GH+ WV+ W S DG LL
Sbjct: 253 SSTTPPDELTSSANLFSINYTPYRCSSHAVMQGHDDWVHSTVW---SNDGRV------LL 303
Query: 416 SSSLDKTLIIWE 451
++S DKT IIW+
Sbjct: 304 TASSDKTCIIWK 315
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 47 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
+L A DH I + + +T GH DWVR ++ + ND + ASAS D + +W
Sbjct: 206 VLSASRDHTIKQWDISTGYCVYTFRGHNDWVR---MIRISNDGTLFASASLDQTVTVW 260
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 326 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
L HE WV G+ +HP K Y L+S + DKTL +WE
Sbjct: 328 LLAHENWVRGLAFHP--------KGKY-LISVADDKTLRVWE 360
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 113 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEE 274
TL+ HE+WVRGL +I S + D +R+W ++ AQ K I+ E
Sbjct: 327 TLLAHENWVRGL-AFHPKGKYLI--SVADDKTLRVW---ELSAQRCMKAIEAHE 374
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 47 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
+L A DH I + + +T GH DWVR ++ + ND + ASAS D + +W
Sbjct: 206 VLSASRDHTIKQWDISTGYCVYTFRGHNDWVR---MIRISNDGTLFASASLDQTVTVW 260
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 326 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 451
L HE WV G+ +HP K Y L+S + DKTL +WE
Sbjct: 328 LLAHENWVRGLAFHP--------KGKY-LISVADDKTLRVWE 360
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 113 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKLIKVEE 274
TL+ HE+WVRGL +I S + D +R+W ++ AQ K I+ E
Sbjct: 327 TLLAHENWVRGL-AFHPKGKYLI--SVADDKTLRVW---ELSAQRCMKAIEAHE 374
>AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical
protein T05A8.5 protein.
Length = 378
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 122 GHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQK 232
GHE V L ++++D ++AS S D IRLW+I++
Sbjct: 268 GHEGNVTSLSIVQMDQTKRLLASVSADRQIRLWKIEE 304
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 308 VKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDS 460
+KL L GH WV + + T+ +LSSS DKT+++W+ DS
Sbjct: 6 MKLTGTLEGHTGWVTQIATY-------TRNDKTTVLSSSRDKTILVWDVDS 49
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 86 VGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQPESKL 259
V E TL GH WV + ND V S+S+D I +W + V E +
Sbjct: 2 VQEQMKLTGTLEGHTGWVTQI-ATYTRNDKTTVLSSSRDKTILVWDVDSVAPVDEGPI 58
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 33.9 bits (74), Expect = 0.095
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 38 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTI-IVASASQDTYIR 214
K + A DD +I IF E + + H D++R L V + T+ + SAS D IR
Sbjct: 161 KNWIATASDDQQIRIFDAETFSLINEFTAHSDFIRSLTV----HPTLPYLISASDDRKIR 216
Query: 215 LW 220
+W
Sbjct: 217 VW 218
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 47 LLCALDDHKIHIFVGEDYHRAHTLV-GHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
++C + IH+F E R T+V HED V V D + ++ SA D +++W
Sbjct: 242 IVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVN--SVCFADLGSNLIYSAGDDGLVKVW 298
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 47 LLCALDDHKIHIFVGEDYHRAHTLV-GHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
++C + IH+F E R T+V HED V V D + ++ SA D +++W
Sbjct: 283 IVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVN--SVCFADLGSNLIYSAGDDGLVKVW 339
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 29 CANKPLLLCALDDHKIHIFVGEDYHRAHTLV-GHEDWVRGLDVLEVDNDTIIVASASQDT 205
C NKPLL D + +F E+ + GH+ + ++ +E +D ++ A+ +D
Sbjct: 69 CENKPLLAIGYADGSVKLFNQENEDSEPIMFSGHK---KAVNCIEFSSDGLLFATGGKDG 125
Query: 206 YIRLWRI 226
I LW I
Sbjct: 126 VIVLWDI 132
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = -3
Query: 610 KSPNVKRAIVTMSQEGHTFWSKTAPVETQASASHFAHPDLL 488
K P K A V SQE H FW K P++ S SH DLL
Sbjct: 1133 KEPRWKAAGV--SQEEHDFWIKNKPLQDIVSKSHAMVKDLL 1171
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 35 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 214
++P+ + DD+KI ++ + TL+GH D++R + + SAS D +R
Sbjct: 64 DQPIFVSGGDDYKIKVWNYKQKRCIFTLLGHLDYIR---TTFFHHKYPWIISASDDQTVR 120
Query: 215 LWRIQ 229
+W Q
Sbjct: 121 IWNWQ 125
Score = 31.9 bits (69), Expect = 0.38
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Frame = +2
Query: 41 PLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
P ++ A DD + I+ + + L GH +V ++ +VASAS D +R+W
Sbjct: 108 PWIISASDDQTVRIWNWQSRNSIAILTGHNHYVMCAQFHPTED---LVASASLDQTVRVW 164
Query: 221 RIQKVKAQ-------PESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSF 379
I ++ + P + ++F D + ++ VL GH+ GV W +
Sbjct: 165 DISGLRKKQMPGGGAPSRPTGGQQAELFGQPDAV----VKHVLEGHDR---GVNWVAFHH 217
Query: 380 DGPTKKPVYRLLSSSLDKTLIIW 448
P L+S S D+ + IW
Sbjct: 218 TNPI------LVSGSDDRQVKIW 234
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 110 HTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKA 241
H L GH+ RG++ + + I+ S S D +++WR + KA
Sbjct: 201 HVLEGHD---RGVNWVAFHHTNPILVSGSDDRQVKIWRYNETKA 241
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 31.1 bits (67), Expect = 0.67
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 2/131 (1%)
Frame = +2
Query: 74 IHIFVGE--DYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKAQP 247
IHIF D+ HTL H+ V GLD T + S SQD +W K +P
Sbjct: 38 IHIFEWRNGDWQSIHTLSEHDLPVTGLDW---GTKTNRIVSCSQDKNAFVWTFDKNVWKP 94
Query: 248 ESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSL 427
E L++ + WS G A + V ++ D K + + + S++
Sbjct: 95 ELVLVRFNRAATYV---KWSPLENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTV 151
Query: 428 DKTLIIWEPDS 460
T + W ++
Sbjct: 152 --TCLDWHSNN 160
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 335 HEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTD 472
HE V V W P S D KK RL+S+ DK + IW D ++ +
Sbjct: 151 HEQGVNSVCWAPGSADPAAKK---RLVSAGNDKNVKIWAFDDATNE 193
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 38 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTI-IVASASQDTYIR 214
K ++ DD I +F R H H D++R L V + T+ V S+S D ++
Sbjct: 69 KSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSL----VVHPTLPYVISSSDDMLVK 124
Query: 215 LW 220
+W
Sbjct: 125 MW 126
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 38 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRL 217
KP ++ DDH + I+ ++ TL GH + + + + ++ + S+D+ +RL
Sbjct: 199 KPYIISGADDHLVKIWDYQNKTCVQTLDGH---AQNVSSVCFHPELPLIITGSEDSTVRL 255
Query: 218 W 220
W
Sbjct: 256 W 256
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 113 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQK 232
+L H DWV D++ + I++ SAS DT +++W I++
Sbjct: 85 SLEQHTDWVN--DMILCGHGKILI-SASNDTTVKVWNIER 121
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +2
Query: 35 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 214
N L+L A + I +F + L GH D VR L V++D SA D IR
Sbjct: 189 NLSLVLGAGTEKCIRLFDPRTNEKIMKLRGHTDNVRAL---VVNDDGTRALSAGSDATIR 245
Query: 215 LWRI 226
LW I
Sbjct: 246 LWDI 249
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 113 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQK 232
+L H DWV D++ + I++ SAS DT +++W I++
Sbjct: 85 SLEQHTDWVN--DMILCGHGKILI-SASNDTTVKVWNIER 121
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +2
Query: 35 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 214
N L+L A + I +F + L GH D VR L V++D SA D IR
Sbjct: 189 NLSLVLGAGTEKCIRLFDPRTNEKIMKLRGHTDNVRAL---VVNDDGTRALSAGSDATIR 245
Query: 215 LWRI 226
LW I
Sbjct: 246 LWDI 249
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 335 HEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 448
HE V V W P S D KK RL+S+ DK + IW
Sbjct: 151 HEQGVNSVCWAPGSADPAAKK---RLVSAGNDKNVKIW 185
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
R HTL GH RG VL VD + ++ + S+D +LW I+
Sbjct: 1251 RTHTLEGH---ARG--VLSVDVNEKLMVTGSKDRTAKLWDIE 1287
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical protein
T01G1.1a protein.
Length = 1605
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
R HTL GH RG VL VD + ++ + S+D +LW I+
Sbjct: 1276 RTHTLEGH---ARG--VLSVDVNEKLMVTGSKDRTAKLWDIE 1312
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
R HTL GH RG VL VD + ++ + S+D +LW I+
Sbjct: 1251 RTHTLEGH---ARG--VLSVDVNEKLMVTGSKDRTAKLWDIE 1287
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical protein
T01G1.1a protein.
Length = 1605
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
R HTL GH RG VL VD + ++ + S+D +LW I+
Sbjct: 1276 RTHTLEGH---ARG--VLSVDVNEKLMVTGSKDRTAKLWDIE 1312
>Z82271-5|CAI46599.1| 378|Caenorhabditis elegans Hypothetical
protein T01G1.1b protein.
Length = 378
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
R HTL GH RG VL VD + ++ + S+D +LW I+
Sbjct: 49 RTHTLEGH---ARG--VLSVDVNEKLMVTGSKDRTAKLWDIE 85
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 104 RAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQ 229
R HTL GH RG VL VD + ++ + S+D +LW I+
Sbjct: 1280 RTHTLEGH---ARG--VLSVDVNEKLMVTGSKDRTAKLWDIE 1316
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 607 SPNVKRAIVTMSQEGHTFWSKTAP---VETQASASHFAHPDLLYPD 479
S K T+S E + F+ ++ P +S+S HP LYP+
Sbjct: 321 SSTSKSISATVSDENYDFYERSCPYIPTSPTSSSSFIPHPPTLYPE 366
>Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical
protein F52A8.2 protein.
Length = 356
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 44 LLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
+L D+++ ++ R L GHE+ + L D V SAS D IR+W
Sbjct: 300 ILFAGYGDYRVGVWDSLKCARHSVLYGHENRI---SCLRTSPDGTAVCSASWDCTIRIW 355
>AL132904-1|CAC35832.2| 385|Caenorhabditis elegans Hypothetical
protein Y111B2A.1 protein.
Length = 385
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 62 DDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLWRIQKVKA 241
D K F + + HT G EDWVR ++++ VA+A I+L + K+ +
Sbjct: 69 DAEKKKKFALKLFKAGHTQFGCEDWVRESEIMK------SVAAAHHPNLIKLVKSGKMAS 122
Query: 242 QPESKL 259
PE L
Sbjct: 123 VPEGYL 128
>AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeric G
protein beta subunit2 protein.
Length = 356
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 44 LLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
+L D+++ ++ R L GHE+ + L D V SAS D IR+W
Sbjct: 300 ILFAGYGDYRVGVWDSLKCARHSVLYGHENRI---SCLRTSPDGTAVCSASWDCTIRIW 355
>AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical
protein F39E9.12 protein.
Length = 550
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = -3
Query: 163 NFQHVKS---PNPVFVSNQSMRSVIVLTDEY 80
+F H+ S PNPVF +++S+ ++VL D +
Sbjct: 190 DFGHLMSTIHPNPVFPNDRSVEKILVLADRF 220
>Z83106-2|CAB05494.1| 321|Caenorhabditis elegans Hypothetical
protein F22B8.3 protein.
Length = 321
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 285 WNTFSSTLISLDSGWALTFCILH 217
W FS + + GW L FCI++
Sbjct: 125 WAVFSESKLKFFKGWRLIFCIMY 147
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 65 DHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRLW 220
D + ++ E T GH + + VL DN T I SAS D++IR+W
Sbjct: 230 DKTVVLYDYEKEQVMQTFKGHNKKINAV-VLHPDNITAI--SASADSHIRVW 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,592
Number of Sequences: 27780
Number of extensions: 319242
Number of successful extensions: 1054
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -