Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f17
         (178 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8N9U2 Cluster: CDNA FLJ36520 fis, clone TRACH2002100; ...    32   2.9  

>UniRef50_Q8N9U2 Cluster: CDNA FLJ36520 fis, clone TRACH2002100;
           n=2; Homo sapiens|Rep: CDNA FLJ36520 fis, clone
           TRACH2002100 - Homo sapiens (Human)
          Length = 206

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 89  CXQRNERCEFHC-DTVCGWW 33
           C  R+ RC F C +  CGWW
Sbjct: 61  CSSRSSRCSFSCSERACGWW 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,157,310
Number of Sequences: 1657284
Number of extensions: 1292821
Number of successful extensions: 2983
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2983
length of database: 575,637,011
effective HSP length: 38
effective length of database: 512,660,219
effective search space used: 10253204380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)