Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f17
         (178 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   0.66 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   0.66 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   0.66 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.7  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    20   2.7  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    20   2.7  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    20   2.7  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    20   2.7  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    20   2.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    19   4.7  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 0.66
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 77  NERCEFHCDTVCGW 36
           NE CEFH + +  W
Sbjct: 294 NELCEFHKNGIIEW 307


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 0.66
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 62  FHCDTVCGWWNYSIRGRRYY 3
           F CD   G++  SIR  R Y
Sbjct: 53  FACDGCAGFFKRSIRRNRQY 72


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 0.66
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 62  FHCDTVCGWWNYSIRGRRYY 3
           F CD   G++  SIR  R Y
Sbjct: 53  FACDGCAGFFKRSIRRNRQY 72


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 141 HCDMKFGSWTY 151


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 141 HCDMKFGSWTY 151


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 141 HCDMKFGSWTY 151


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 141 HCDMKFGSWTY 151


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 141 HCDMKFGSWTY 151


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 109 YVQWTICGKNYML*KMNC 162
           Y+Q  + G++Y++ + NC
Sbjct: 81  YIQHPLPGQDYVIGQENC 98


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 109 YVQWTICGKNYML*KMNC 162
           Y+Q  + G++Y++ + NC
Sbjct: 81  YIQHPLPGQDYVIGQENC 98


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 109 YVQWTICGKNYML*KMNC 162
           Y+Q  + G++Y++ + NC
Sbjct: 81  YIQHPLPGQDYVIGQENC 98


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 109 YVQWTICGKNYML*KMNC 162
           Y+Q  + G++Y++ + NC
Sbjct: 81  YIQHPLPGQDYVIGQENC 98


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 109 YVQWTICGKNYML*KMNC 162
           Y+Q  + G++Y++ + NC
Sbjct: 81  YIQHPLPGQDYVIGQENC 98


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 65  EFHCDTVCGWWNYSIRGRRYY 3
           ++ CD   GW     R RR Y
Sbjct: 707 KWSCDCDLGWVEVWERKRRQY 727


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,310
Number of Sequences: 336
Number of extensions: 371
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 38
effective length of database: 109,817
effective search space used:  2196340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)