Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f17
         (178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    27   1.8  
AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    26   4.1  
Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    25   9.4  

>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 101 GDRYCXQRNERCEFHCDTVCGWWN 30
           G  +C +R +    +C   CGW N
Sbjct: 535 GQNFCTRRRQWMAENCQATCGWCN 558


>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 62  FHCDTVC-GWWNYSIRGRRYY 3
           F+C TVC GW  +    RR+Y
Sbjct: 46  FYCQTVCFGWAGFVYNYRRWY 66


>Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical
           protein C50B8.3 protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 77  CAXRNSDRRRAMFSGRFAAKTI 142
           C+  NSDR  A+FSG  + K +
Sbjct: 163 CSLVNSDRGTAVFSGNISTKVL 184


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 89  CXQRNERCEFHCDTVCGWWNYSIRGRRY 6
           C + N  C F  DT CGW +  +  R +
Sbjct: 436 CEETN--CNFEKDTKCGWADLRMLSRHF 461


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
            protein C44E4.7 protein.
          Length = 1145

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 62   IRSAHCAXRNSD-RRRAMFSGRFAAKTICF 148
            +R+  C    SD RRR + +G F  K  CF
Sbjct: 1103 VRAKFCREIESDKRRRQLIAGLFREKEKCF 1132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,946
Number of Sequences: 27780
Number of extensions: 35917
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)