Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f17
         (178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   2.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   3.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   3.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   3.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   3.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   3.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   3.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   3.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   3.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +3

Query: 111  CSVDDLRQKLYALEDELWRNVS 176
            C +D L++    L   LW   S
Sbjct: 1889 CDIDSLKKLKLGLRSSLWSRPS 1910


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +3

Query: 111  CSVDDLRQKLYALEDELWRNVS 176
            C +D L++    L   LW   S
Sbjct: 1885 CDIDSLKKLKLGLRSSLWSRPS 1906


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 124 HCDMKFGSWTY 134


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 124 HCDMKFGSWTY 134


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 124 HCDMKFGSWTY 134


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 124 HCDMKFGSWTY 134


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 124 HCDMKFGSWTY 134


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 124 HCDMKFGSWTY 134


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 192 HCDMKFGSWTY 202


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 59  HCDTVCGWWNY 27
           HCD   G W Y
Sbjct: 192 HCDMKFGSWTY 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,104
Number of Sequences: 438
Number of extensions: 346
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)