Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f16
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    28   1.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.3  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -2

Query: 238 RQLYKISVATFKNHHIVYLANSKDELVLDFTHLNHIIFA 122
           ++L++IS++   NH+  Y+    DE +L ++   + +FA
Sbjct: 307 KRLHRISLSKVYNHYCPYIDTHDDEKILSYSLKPNQVFA 345


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 374 HTTAAHPKEGAPHHLNHFRLRVIQILNLSRDRVKKKT 484
           H T +   EG+P +L+ ++  V  I+N     + KKT
Sbjct: 178 HQTTSLNLEGSPINLHAYKGTVTSIINDDSRNINKKT 214


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -2

Query: 193 IVYLANSKDELVLDFTHLNHIIFAHNNIPTYFPLKY 86
           +++L ++   L +    L H +   NN P + P+ +
Sbjct: 47  LIFLLSNNSNLAVTSRSLRHRLSLRNNTPIFMPIDF 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,575
Number of Sequences: 5004
Number of extensions: 42272
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)