Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f16
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC006632-7|AAK85470.1|  225|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 410 HHLNHFRLRVIQILNLSRDRVKKKTPTEHLFINYKRHSL 526
           HH N  RL  I I ++S D +K+     +L   Y  H L
Sbjct: 366 HHKNIVRLMDIVIDDISMDELKRTRANFYLVFEYVDHDL 404


>AC006632-7|AAK85470.1|  225|Caenorhabditis elegans Hypothetical
           protein F28A10.4 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 289 KWADGFELRHIFMFCDKRQLYKISVATFKNHHIVYL 182
           K ADG   RH  + C +   YK S  T++  H V++
Sbjct: 166 KIADGLFRRHCQVDCPEDMKYKTSTETWRTIHDVHI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,236
Number of Sequences: 27780
Number of extensions: 228771
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)