Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f14
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0050 + 8565612-8566523                                           33   0.21 
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    31   0.64 
12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798...    29   2.6  
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    29   4.5  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    28   6.0  

>10_05_0050 + 8565612-8566523
          Length = 303

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 590 RFGGVALTYLYCSGSGPGCNRKPAN*ALVNGSNSLPPIGLLAITELRV 447
           R GGV + Y +  G GPGC+R     + V+  +   PI +LA T ++V
Sbjct: 33  RCGGVDIPYPF--GIGPGCSRHGFELSCVSNGSGAGPIAVLAGTSIQV 78


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +1

Query: 274 MKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQDDNSTL 453
           M  PPGE  LT ATN+  +Y ++H      G     S SS  P+LP       + D S L
Sbjct: 1   MAAPPGEAPLTAATNIEPFY-VLH-----KGGAAASSSSSSAPSLPSSGRARRRIDVSGL 54

Query: 454 SS 459
           +S
Sbjct: 55  AS 56


>12_02_0841 +
           23579344-23579394,23579522-23579584,23579717-23579826,
           23580220-23580320,23580816-23580877,23580972-23581112,
           23581388-23581523,23582257-23582284,23582665-23582728,
           23582924-23583044,23583565-23583623,23583716-23583784,
           23583875-23584015,23584130-23584194,23584345-23584441,
           23584803-23584862,23585409-23585561,23586022-23586088,
           23586174-23586284,23586689-23586799,23587370-23587567,
           23587679-23587860
          Length = 729

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 367 KKLKESLSSFLPNLPGIVDGPGQDDNSTLSSVI-AKRPIGGK 489
           K+L   + SF+ NLP I +GP  D +  LS ++ +  P+G K
Sbjct: 586 KRLSPQMMSFITNLPAI-EGPSPDMDIVLSVLMQSTLPVGDK 626


>08_02_0246 +
           14745367-14745372,14745452-14746106,14746299-14747269,
           14748123-14749168,14750669-14751473
          Length = 1160

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +1

Query: 205 GTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKES 384
           G+L++ I+  K  S      + L      +     + ++ A  G V S S+  G   K S
Sbjct: 180 GSLQSNINAAKVTSGTGLNNYLLSNSKNAQSTSAFSGSVPAGLGNVSS-SRSEGAYKKRS 238

Query: 385 LSSFLPNLPG-----IVDGPGQ 435
           LS FL N+P      I DGPG+
Sbjct: 239 LSEFLQNIPSSKQSIIGDGPGK 260


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 376  KESLSSFLPNLPGIVDGPGQDDN--STLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPL 549
            +++L     NL G +   G D++  ST   VIA  P  GK LL L S  ++  + HP   
Sbjct: 1303 RKALDFLWKNLAGSIQVEGMDNSNVSTGGCVIAHTPGSGKTLL-LISFLVSYMKAHPRSR 1361

Query: 550  P 552
            P
Sbjct: 1362 P 1362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,076
Number of Sequences: 37544
Number of extensions: 413317
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)