Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f14
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-6|AAF36035.1| 199|Caenorhabditis elegans Mediator prot... 64 1e-10
Z74030-13|CAA98445.2| 336|Caenorhabditis elegans Hypothetical p... 29 2.3
Z49072-3|CAA88881.2| 331|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 27 9.4
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 27 9.4
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 27 9.4
L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical pr... 27 9.4
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 27 9.4
>AC024202-6|AAF36035.1| 199|Caenorhabditis elegans Mediator protein
19 protein.
Length = 199
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +1
Query: 262 PFYLMKEP-PGECELTGATNLMAYYGLVHSYSKFNG-KKLKESLSSFLPNLPGIVDGPGQ 435
PFY +K P E+ G +L+ Y L F+G +++KE +SSFLP++ G
Sbjct: 21 PFYTLKALLPPYSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDAT 80
Query: 436 DDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYV 570
+ S+L ++I K PI KE+ LTS+ + GF+L GP+ E+YR++
Sbjct: 81 KEASSLRALIEKPPIH-KEISNLTSSSMQGFKLSAGPVDERYRHL 124
>Z74030-13|CAA98445.2| 336|Caenorhabditis elegans Hypothetical
protein D1054.12 protein.
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 667 MNLVKVSLAQEAHRLYAYVSYVCFYVALVVLHSHICTAQEVGQGVIENLPTE 512
M VK S+ H + A+V + ++A+ VL +C+ +G ++ +PT+
Sbjct: 45 MRTVKASMLA-LHCIGAFVDFYLSFIAIPVLTLPVCSGYPLGFSLVLGIPTD 95
>Z49072-3|CAA88881.2| 331|Caenorhabditis elegans Hypothetical
protein T24A11.2 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 295 CELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLP 411
CELT T + + G++ S + +NG F+PN P
Sbjct: 120 CELTMRTGIPSAVGMIFSMAFYNGAFDVHEKMRFVPNYP 158
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 532 LHPGPLPEQYRYVSATPP 585
L PGP P+ YR+ + PP
Sbjct: 29 LQPGPSPKPYRFTESEPP 46
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 532 LHPGPLPEQYRYVSATPP 585
L PGP P+ YR+ + PP
Sbjct: 29 LQPGPSPKPYRFTESEPP 46
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 1111 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 1146
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 1133 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 1168
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 924 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 959
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 1231 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 1266
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 1111 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 1146
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 1133 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 1168
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 924 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 959
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 1231 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 1266
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 942 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 977
>L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical
protein F42H10.5 protein.
Length = 810
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +1
Query: 151 KSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAY 330
+++PR SP + +S T +++S G L + P + + N M +
Sbjct: 133 QNTPRQTGSPASTCNTNSNT-SSSVSSGSGIGSGSGSTMDLSMKKPKKEPSSAKLNEMLF 191
Query: 331 YGLVHSYSKFNGKKLKESLSSFLPNLPGIV 420
GL + + NG + LPN+P V
Sbjct: 192 NGLRQATNNSNGSPPTTPHAPQLPNIPSFV 221
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 145 SPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIV 252
SPK P+ RSP + RQ+S + T + PSI+
Sbjct: 902 SPKVFPKFYRSPFMQRQESQSKTEMTDDETEAPSIM 937
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,881
Number of Sequences: 27780
Number of extensions: 356670
Number of successful extensions: 898
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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