Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f09
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    29   0.85 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.9  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.9  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 7   HVDVKYKTTYEQACINISKE---NRVKHGDPLYLSPQTILLDKIGVIQLFMRSK 159
           ++    + TY +A + I+K    N+V+H   LYL  Q IL D +  +   +  K
Sbjct: 215 NISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTLTFVVHLLSQK 268


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 569 CEQWGKHDSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 417
           CE +G +   A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLY--VAFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 85  DPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 201
           D L ++    L+DK+G  ++       N A+L NW   H
Sbjct: 680 DLLIVNKSQPLVDKLGKPEILFMGPDENTADLVNWATIH 718


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 317 YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 180
           Y  VV + +W      ++  +A ++W+RL+ + V +G   S  Q C
Sbjct: 122 YFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 476 SCFISFSSSVWCTVGSVCSTYCIWSSSARPQFRV 375
           SCF+ F   +      +C  +C W      QF V
Sbjct: 500 SCFVRFIHRLVVNAPDLCGEWCDWYRHCLKQFSV 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,046
Number of Sequences: 5004
Number of extensions: 48255
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)