Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f09
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0183 - 21406474-21406636,21407412-21407956                       31   0.67 
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    30   1.5  
10_06_0161 + 11344712-11344877,11345870-11346084                       28   6.2  
05_01_0051 - 345125-345693,345833-346925                               28   8.3  

>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 120 RQNRRYTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPS 254
           R+N R +   A Q  +RG   +   R+    +HRVG E  P RPS
Sbjct: 60  RENERSSGKKAAQRERRGAYRRP--RSTTVGIHRVGAEATPPRPS 102


>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 138 TAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 287
           TA   L++  RGGA +   R   A +H  G +P  R  +DG    R R G
Sbjct: 89  TADRELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAG 138


>10_06_0161 + 11344712-11344877,11345870-11346084
          Length = 126

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = -3

Query: 250 GRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA*TAV 137
           GR GAGS   RC G   +R+ ++AA    A W+A TAV
Sbjct: 6   GRAGAGSGDWRCAG--WLRRADWAASR--AGWAALTAV 39


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 289 HFYAATTLLYAERNLF 336
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,353
Number of Sequences: 37544
Number of extensions: 353010
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)