Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f08
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    96   3e-21
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   3.0  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   4.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.3  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   7.0  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.0  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   7.0  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = +1

Query: 133 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 309
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 310 RRMGESDDCIVRLTKKDGIL 369
           R  GESDDCI RLT +DG+L
Sbjct: 60  RSKGESDDCINRLTTQDGLL 79


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 233 SCTEAWSLAWMRRLLAEHFLGQYKST 156
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 215 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 123
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  VGFSCFIDILTTFRRVLTVKLLKNFPLQTY 129
           +G  CFI I T+F  +L  K L+ +  + Y
Sbjct: 524 IGVLCFIFIATSFPMILCGKRLRKWTAKQY 553


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 97  KLLKNFPLQTYKMQNDAGEFVDLYC 171
           + +  F   TYK  ND GEF   YC
Sbjct: 196 RFMDGFSSHTYKFVNDKGEF--YYC 218


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -1

Query: 263 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 123
           P+     A+T  TE W++A+    +A  F     S       C  Y+
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYL 528


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 309 DSPT--DNIHFRCVSSTTCGGVYVSN 238
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,559
Number of Sequences: 5004
Number of extensions: 30608
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)