Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f08
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     73   1e-13
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    71   3e-13
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   0.56 
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790...    27   5.2  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 37/75 (49%), Positives = 48/75 (64%)
 Frame = +1

Query: 133 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 312
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 313 RMGESDDCIVRLTKK 357
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 36/75 (48%), Positives = 47/75 (62%)
 Frame = +1

Query: 133 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 312
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 313 RMGESDDCIVRLTKK 357
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 125 HIKCRTTPVNSLTCTARGNARPATASST 208
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>02_02_0211 +
           7898434-7898574,7898759-7899349,7899575-7899821,
           7900020-7900118,7900158-7900321,7900371-7900870,
           7901007-7901256,7901461-7901549,7901823-7902064,
           7902175-7902479,7902798-7902906,7903150-7903313
          Length = 966

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 RHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQCS 232
           R ++CR TPV S T +   N RP   +  ++   QCS
Sbjct: 411 RFVECRHTPVVSRTYST--NKRPLPTTEVVKLTEQCS 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,005,032
Number of Sequences: 37544
Number of extensions: 208487
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)