Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f08
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   112   1e-25
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024876-3|AAU05556.1|  871|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  112 bits (269), Expect = 1e-25
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +1

Query: 133 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 309
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 310 RRMGESDDCIVRLTKKDGILAKN 378
           RRMGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 215 SLAWMRRLLAEHFLGQYKSTNSPASFCILYVCNGKFLSNFTV 90
           S  W+ RL A   L  Y ST   A+  +  +CNG     FT+
Sbjct: 92  SATWLVRLSASLSLPVYPSTLKEANLFVTVICNGYAYPLFTL 133


>AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5a protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 70  TTFRRVLTVKLLKNFPLQTYKMQNDAGEFVDLYC 171
           TT  R L V   +   LQT+K+  + G F  L C
Sbjct: 91  TTGIRALMVSPTRELALQTFKVVKELGRFTGLRC 124


>AC024876-3|AAU05556.1|  871|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5b protein.
          Length = 871

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 70  TTFRRVLTVKLLKNFPLQTYKMQNDAGEFVDLYC 171
           TT  R L V   +   LQT+K+  + G F  L C
Sbjct: 91  TTGIRALMVSPTRELALQTFKVVKELGRFTGLRC 124


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 247 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 363
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 218 WSLAWMRRLLAEHFLGQYKS 159
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = -1

Query: 302  PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 123
            PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792  PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 122  CNGKFLSNFTVKTR 81
               +F  +  V T+
Sbjct: 852  QPYQFTCDSKVPTK 865


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = -1

Query: 302  PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 123
            PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792  PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 122  CNGKFLSNFTVKTR 81
               +F  +  V T+
Sbjct: 852  QPYQFTCDSKVPTK 865


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,459,577
Number of Sequences: 27780
Number of extensions: 180233
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)