Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f06
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 0.54
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 27 1.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.9
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 3.8
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 25 6.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 6.7
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 8.8
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 24 8.8
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 24 8.8
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 28.3 bits (60), Expect = 0.54
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 251 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 346
EY+P SI G+K K + K+ IKN + T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 254 YVPTS--ISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 388
Y PT + +K N+V +K+ S + +NT A PT + +N +D
Sbjct: 60 YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKD 106
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 1.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 248 TEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT------AAPTLLMVSDNTQDTNMSE*I 409
T VP++ SG KK ++S A + KN+ N A P LL+ +N ++ SE +
Sbjct: 646 TPAVPSAKSGLKKDQSSEVANKDVVSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHL 705
Query: 410 KNF 418
+F
Sbjct: 706 ISF 708
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 2.9
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = -2
Query: 255 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 76
YSV++ +T S+TVLN + + S +N+S+ + S ++ + + NS ++
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650
Query: 75 ISQLSFNSAKFALVSTAV 22
S L NS+ STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 38 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 211
NA + +K+S + F ++ FNNN+ L + + D + ++++K
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582
Query: 212 TVALKLPVAPSTTEYVPTSISGSK 283
L +P+ YV +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 242 STTEYVPTSISGSKKRK 292
S++ +VP +S SKKRK
Sbjct: 71 SSSHFVPNGVSNSKKRK 87
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 110 LNETFNNNVAPLLSSIYDEVLTRD 181
+NETF+ V P+L + YD +++ +
Sbjct: 1394 VNETFSKYVFPVLFAYYDIIMSAE 1417
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 239 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDT 391
P+T+ SIS +K S + +K+ +T AAP L S + + T
Sbjct: 85 PTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSPSHSYEPT 135
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 194 NMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRS 319
N F ALK P T+ S + S K K +VP +Q+S
Sbjct: 522 NFGIFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKS 563
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 233 VAPSTTEYVPTSISGSKKRKNSVPAKQRSS 322
+ P TT PTSIS S N++ SS
Sbjct: 68 ITPGTTTIYPTSISTSGVSSNNIDETSVSS 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,675
Number of Sequences: 5004
Number of extensions: 32798
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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