Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f06
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 34 0.051
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 32 0.21
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 31 0.27
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 31 0.48
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 31 0.48
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 31 0.48
Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 1.9
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 3.4
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 28 3.4
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 27 4.4
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 27 4.4
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 27 5.9
AC136145-1|AAN60521.2| 226|Caenorhabditis elegans Hypothetical ... 27 5.9
Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical pr... 27 7.8
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription... 27 7.8
AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related ... 27 7.8
AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein. 27 7.8
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 33.9 bits (74), Expect = 0.051
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 218 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLL--MVSDNTQDT 391
+L V ST + TS SK + VP++ S+ N +T + TLL +S +TQ T
Sbjct: 1387 SLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHT 1446
Query: 392 NMSE 403
MS+
Sbjct: 1447 TMSK 1450
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 31.9 bits (69), Expect = 0.21
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 80 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 250
D+ +E Y+ LN F +NV L+S I + + D I +++ K ++LP +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319
Query: 251 EYVPTSISGSKK 286
E P ++ G +
Sbjct: 320 EQPPRTVLGCSR 331
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 31.5 bits (68), Expect = 0.27
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = +2
Query: 47 LAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVA-- 220
LA +K+ + D+L + LN ++ AP + +++ + ++ ++ + A A
Sbjct: 33 LALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYMPASTAPTSASATA 92
Query: 221 --LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 358
LK AP+ PT+ G +K +S A + S R+ + P+
Sbjct: 93 PDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISPPPS 140
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 38 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 166
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 38 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 166
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 38 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 166
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 432 FFKCTKFFIYSDIFVSCVLSLTIKS 358
FF CT F++ D+F S +S +K+
Sbjct: 11 FFLCTTVFLFPDLFASSTISRNLKT 35
>Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 432 FFKCTKFFIYSDIFVSCVLSLTIKS 358
FF CT F++ D+F S +S +K+
Sbjct: 11 FFLCTTVFLFPDLFASSTISRNLKT 35
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 312 CLAGTEFFLFLLPLIEVGTYSVV 244
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 366 IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDGATGNLSATVLNL 202
I+ V A +L FF G FF+FL+P++ + + +V G +++ +L L
Sbjct: 58 IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTGLMHDVNEFLLGL 111
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 236 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDT 391
AP+TT PT+ + + +VP ++ TT PT + T T
Sbjct: 195 APTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTT 246
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 236 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 388
APST P +S S P + S+ TAA T DN QD
Sbjct: 751 APSTPLQQPKPLSHSSSMNGFNPPVHKRSLSQSLADTAASTAAYALDNLQD 801
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 215 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 355
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 537
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 215 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 355
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 496
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical protein
C04A11.4 protein.
Length = 952
Score = 27.1 bits (57), Expect = 5.9
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Frame = +2
Query: 2 PASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPL-LSSIYDEVLTR 178
PA K+ Q EL E + ++ +F NV P + D+VL++
Sbjct: 797 PAEKEEQNQERATHQHVELYPVAESFRSDSAASFNTRTGSFRPNVQPPPVPRPSDDVLSK 856
Query: 179 ---DFITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKN 295
D + AKF + LP+ P + P + S + R+N
Sbjct: 857 LNEDLAKEKNAKFDRLNKTLPLPPPLPKEKPKTASSTSLRRN 898
>Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical
protein F58G11.3a protein.
Length = 666
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 239 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMSE*IKNF 418
PST +P I S R P K+ IK +++ PT+ +NT+ + E +
Sbjct: 217 PSTASSIPIFILRSGSRS---PVKKHVQIKTSSSSSHMPTITEFMNNTKRMMVKE-LPAS 272
Query: 419 VHLKK 433
VHL +
Sbjct: 273 VHLSE 277
>Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical
protein T19B10.5 protein.
Length = 705
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 239 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 385
P T PTSI+ + +R S +KQ+ ++ +R + DN+Q
Sbjct: 351 PLGTISTPTSIATTPQRCTSTDSKQKHALPPQREIIEPDSTTCADDNSQ 399
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical protein
C04A11.4 protein.
Length = 952
Score = 27.1 bits (57), Expect = 5.9
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Frame = +2
Query: 2 PASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPL-LSSIYDEVLTR 178
PA K+ Q EL E + ++ +F NV P + D+VL++
Sbjct: 797 PAEKEEQNQERATHQHVELYPVAESFRSDSAASFNTRTGSFRPNVQPPPVPRPSDDVLSK 856
Query: 179 ---DFITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKN 295
D + AKF + LP+ P + P + S + R+N
Sbjct: 857 LNEDLAKEKNAKFDRLNKTLPLPPPLPKEKPKTASSTSLRRN 898
>AC136145-1|AAN60521.2| 226|Caenorhabditis elegans Hypothetical
protein E_BE45912.2 protein.
Length = 226
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = -2
Query: 429 FKCTKFFIYSDIFVSCVLSLTIKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEV 262
+ FF+Y+ IF C++ I S+ +++ L+ ++ +L LI V
Sbjct: 89 YDLASFFLYATIFCQCIIGWLIGSIVNKTKIKKSKYSKEILSRFDYIKWLFMLIIV 144
>Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical
protein ZK858.1 protein.
Length = 841
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 239 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKN 331
P + Y + + S K +N+ P +QR SI+N
Sbjct: 615 PPPSRYAAGTAAPSHKHRNAHPQRQRPSIRN 645
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 289 KKLSSGQTTIFYKKSPQHYCGSNTFNG 369
KKL + T+ K+ QH+C + T +G
Sbjct: 65 KKLRKLEGTVSIKRETQHFCETTTMHG 91
>AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription
factor RUN protein.
Length = 301
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 221 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 361
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related
protein 1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 221 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 361
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 221 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 361
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,475
Number of Sequences: 27780
Number of extensions: 184615
Number of successful extensions: 688
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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