Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f04
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   1.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   4.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   5.8  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    25   7.6  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 319 SNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVAS 209
           SNSH+  P     EE + + DF ++     +S  V+S
Sbjct: 325 SNSHNSLPYSANEEEDVLQADFLVSQQSSMVSSYVSS 361


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +3

Query: 207 RDATVFDNQHSE-----VAIEKSTSKIDSSDVKIPGRI 305
           R  TV D  HS+     +  E  TSK+D+S  K PG++
Sbjct: 487 RTWTVIDPHHSQSFDNDILAEIPTSKLDNSSQKSPGKL 524


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 425  NVSFLNATASVTNTYSIRIAFGKTMFLTNRSLCC-FFELAPYP 300
            N+ +LN     T  Y++     + MF+T +SLC   FE+  +P
Sbjct: 1269 NMQYLNFAVGCTIAYAVVNHIDRIMFIT-KSLCGEIFEIDKWP 1310


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 316  NSHHIRPGILTSEESIFEVD 257
            NSH + PG L  EE ++E +
Sbjct: 1936 NSHILDPGFLKEEECVYEFE 1955


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 252 EKSTSKIDSSDVKIP 296
           E+ TSKIDSS++++P
Sbjct: 11  EEPTSKIDSSELQVP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,692
Number of Sequences: 5004
Number of extensions: 34862
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)