Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f04
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    27   5.7  
07_01_0507 + 3777505-3777762,3780286-3780390,3780740-3780796,378...    27   5.7  
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897...    27   10.0 

>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
            22582341-22582477,22582567-22582683,22583277-22583440,
            22583542-22583756,22583838-22584004,22584206-22584559,
            22584647-22584795,22584907-22585030,22585132-22585371,
            22585723-22586140,22586297-22586920,22586999-22587183,
            22587302-22587412,22587583-22587789,22587869-22587967,
            22588063-22588159,22588296-22588384,22588495-22588548,
            22588671-22588793,22588872-22588940,22589020-22589089,
            22589202-22589260,22589367-22589570,22590032-22590060,
            22590375-22590433,22590513-22590634,22591637-22591830,
            22591974-22592088
          Length = 1680

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/74 (21%), Positives = 28/74 (37%)
 Frame = -2

Query: 361  GRQCS*QIAVSVASSNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVASLGNANTNTS 182
            G +C   I  + A   + HI      + E +    F     +C++      +G AN   +
Sbjct: 1068 GWRCVFMIFTAAADDENEHIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIGFANNKCT 1127

Query: 181  TVRNIKITKLFR*C 140
               ++K   L R C
Sbjct: 1128 PRISLKAIALLRIC 1141


>07_01_0507 +
           3777505-3777762,3780286-3780390,3780740-3780796,
           3781534-3781863
          Length = 249

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 404 TASVTNTYSIRIAFGKTMFLTNRSLC 327
           TAS  +TYS+ IA GK   +T   LC
Sbjct: 105 TASKLSTYSMAIADGKRTRITKEDLC 130


>06_01_1093 -
           8970996-8971667,8971756-8971902,8971982-8972118,
           8972343-8972612,8972731-8972868,8974965-8975394
          Length = 597

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 143 MRHCFFVHFVINRLEIQKLAHLNRSTRILSKERSRVNVRGAQL 15
           +RHC F    ++   + ++     S ++ S E  RV + GA++
Sbjct: 355 LRHCSFAVMALHGCILSEIQAPPESRKVFSAEIQRVGIEGAKV 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,791
Number of Sequences: 37544
Number of extensions: 204519
Number of successful extensions: 479
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)