Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f04
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    29   2.2  
Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL021176-1|CAA15975.2|  317|Caenorhabditis elegans Hypothetical ...    27   5.1  
U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC006666-1|AAK21417.1|  339|Caenorhabditis elegans Cyclin b prot...    27   6.7  
AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    27   8.9  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    27   8.9  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    27   8.9  

>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 351 HCLPKGYSYGICVSNTCSC 407
           HC P+ Y+YG CV    SC
Sbjct: 601 HCYPEDYNYGSCVDYHRSC 619


>Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 282 DVKIPGRIWCEFEE-ATETAICQEHCLPKGYSY 377
           DV  PG  WC +++ AT T       +PK  SY
Sbjct: 318 DVLSPGEAWCTYDKRATLTVKLARFVIPKSVSY 350


>AL021176-1|CAA15975.2|  317|Caenorhabditis elegans Hypothetical
           protein Y43E12A.1 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 144 DAPLFLCSLCYKQTRNTETCSFKQKHTNIK*GKV 43
           DA   L  + YK  R+ + C+ ++K+ + K G+V
Sbjct: 254 DAIALLAQVAYKNFRHQKLCAIREKYQSSKFGRV 287


>U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical
           protein F28E10.1d protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 289 LTSEESIFEVDFSIATSECWLSKTVASLGNANTNTSTV 176
           L   ESI  +D S+  +E   S   A+  NAN NT  +
Sbjct: 341 LKMNESIISIDRSLPQNESRSSNHAAAQNNANRNTQYI 378


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical protein
            F28E10.1a protein.
          Length = 1134

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 289  LTSEESIFEVDFSIATSECWLSKTVASLGNANTNTSTV 176
            L   ESI  +D S+  +E   S   A+  NAN NT  +
Sbjct: 1025 LKMNESIISIDRSLPQNESRSSNHAAAQNNANRNTQYI 1062


>AC006666-1|AAK21417.1|  339|Caenorhabditis elegans Cyclin b protein
           2.2 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 144 DAPLFLCSLCYKQTRNTETCSFKQKHTNIK*GKV 43
           DA   L  + YK  R+ + C+ ++K+ + K G+V
Sbjct: 276 DAISLLAQVAYKNFRHQKLCAIREKYQSSKFGRV 309


>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 228 NQHSEVAIEKSTSKIDSSDVKIPGRIWCEFEEATETAICQEHCLPKGYSY-GICVSNTCS 404
           N  S +  ++    +D  + ++      +  ++   A C++HC   G+ Y G+   + C 
Sbjct: 103 NHDSRLIDQRIGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHECF 162

Query: 405 C 407
           C
Sbjct: 163 C 163


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 228 NQHSEVAIEKSTSKIDSSDVKIPGRIWCEFEEATETAICQEHCLPKGYSY-GICVSNTCS 404
           N  S +  ++    +D  + ++      +  ++   A C++HC   G+ Y G+   + C 
Sbjct: 103 NHDSRLIDQRIGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHECF 162

Query: 405 C 407
           C
Sbjct: 163 C 163


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 228 NQHSEVAIEKSTSKIDSSDVKIPGRIWCEFEEATETAICQEHCLPKGYSY-GICVSNTCS 404
           N  S +  ++    +D  + ++      +  ++   A C++HC   G+ Y G+   + C 
Sbjct: 103 NHDSRLIDQRIGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHECF 162

Query: 405 C 407
           C
Sbjct: 163 C 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,651
Number of Sequences: 27780
Number of extensions: 204763
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)