Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f04
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   0.54 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   2.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   2.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.7  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   8.7  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   8.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   8.7  

>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +3

Query: 300 RIWCE---FEEATETAICQEHCLPKGYSYGICVSNTCSC 407
           R+ C+   F+     + C  +CL  G + G C    C C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKGVCIC 81


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +3

Query: 300 RIWCE---FEEATETAICQEHCLPKGYSYGICVSNTCSC 407
           R+ C+   F+     + C  +CL  G + G C    C C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKVGCIC 81


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +2

Query: 77  LNEQVSVFLVCL*QSEQRNNGASTEKFGYFYISHGARV 190
           + +Q+   +  + QS+QR+  A+   +G+    HG  +
Sbjct: 778 VQQQMQAAMAAVQQSQQRHQHAAQMIYGHQQSHHGLHI 815


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +3

Query: 300 RIWCE---FEEATETAICQEHCLPKGYSYGICVSNTCSC 407
           R+ C+   F+     + C  +C   G + G C    C C
Sbjct: 18  RVTCDLLSFKGQVNDSACAANCHSLGKAGGHCEKGVCIC 56


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 114 YKQTRNTETCSFKQKHTNIK*GKVKSEC-EGRSVAVV 7
           YK+  + E  +++ K T+I       EC E  + AVV
Sbjct: 179 YKEEESNENYNWEHKETHIDWQPEDEECTEATAGAVV 215



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 226 SKTVASLGNANTNTSTVRN 170
           + +  + GNANTN S   N
Sbjct: 224 NNSTITAGNANTNASNNNN 242


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 295 LGGYGASSKKQQRLRFVRNIVFPKAI 372
           +G  G   KK   +  V+N +FP+ I
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPEDI 84


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 295 LGGYGASSKKQQRLRFVRNIVFPKAI 372
           +G  G   KK   +  V+N +FP+ I
Sbjct: 60  MGFQGVRGKKNSIINDVKNELFPEDI 85


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 295 LGGYGASSKKQQRLRFVRNIVFPKAI 372
           +G  G   KK   +  V+N +FP+ I
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPEDI 84


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 295 LGGYGASSKKQQRLRFVRNIVFPKAI 372
           +G  G   KK   +  V+N +FP+ I
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPEDI 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,127
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)