Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f03
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 1.5
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 29 2.0
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 29 2.0
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 28 2.6
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431... 28 2.6
05_06_0025 + 25018426-25018596,25018692-25018892,25018983-250192... 28 3.5
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 27 4.6
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 27 4.6
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 27 4.6
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667... 27 6.0
02_01_0679 - 5048653-5051394 27 8.0
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718 27 8.0
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 71 ENSVTVNRASSSFTVMAFCTDSEFAYSTI-IRL*FKGHTYMCNMVPNCSKQG 223
EN++ + R S SF+ + +C + F ST+ ++L F + + CS+ G
Sbjct: 99 ENNLKL-RNSCSFSYLTYCANCAFLVSTVSLQLKFSAFARFTHNIVTCSRDG 149
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 200 VPNCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLIS 358
+P + GF FSAI + + +S WG + I I+ F I+++V ++
Sbjct: 433 IPQMAMAGFLPFSAIYIELYYIFASIWGHKIYTIYSILFIVFIILIIVTAFVT 485
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 200 VPNCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLIS 358
+P + GF FSAI + + +S WG + I I+ F I+++V I+
Sbjct: 453 IPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFIT 505
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 200 VPNCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLIS 358
+P + GF FSAI + + +S WG + I I+ F I+++V I+
Sbjct: 440 IPQMAMAGFLPFSAIYIELYYIFASIWGHRIYTIYSILFIVFIILLIVTAFIT 492
>07_03_0451 +
18340166-18340533,18340576-18341006,18343057-18343184,
18343329-18343958,18344761-18345480
Length = 758
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 226 YNVFGNLLFSHFLFVFGMGFPIYLNSVHS 312
YNVF NL + + F+ G P + VH+
Sbjct: 728 YNVFVNLFLNFWSFIIIFGLPAVIRKVHA 756
>05_06_0025 +
25018426-25018596,25018692-25018892,25018983-25019236,
25019468-25019540,25019659-25019715,25020219-25020298,
25020386-25020448,25020678-25020765,25021055-25021156,
25021296-25021369,25021690-25021754,25021933-25022096,
25022179-25022246,25022337-25022397,25022729-25022766,
25023154-25023329,25023747-25023859,25023944-25023955
Length = 619
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 141 NSESVQKAMTVNDDDARFTVTEFSVVQYYNVAKTEMVNQRIDIISKN 1
N+ V++ MT DD A T+ V+ K + VN+ I N
Sbjct: 515 NAHGVKELMTYTDDTASLAETDLDVLSRNKPTKAKEVNETISSAISN 561
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -2
Query: 294 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAM 115
+DW HS Q+ + C+ F I+H + N + ++ NS S +K +
Sbjct: 641 LDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII---NMDADVITIENSRSDEKLL 697
Query: 114 TVNDDDARF 88
+V + ++
Sbjct: 698 SVFREGVKY 706
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -2
Query: 294 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAM 115
+DW HS Q+ + C+ F I+H + N + ++ NS S +K +
Sbjct: 625 LDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII---NMDADVITIENSRSDEKLL 681
Query: 114 TVNDDDARF 88
+V + ++
Sbjct: 682 SVFREGVKY 690
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 187 IRMSFKSQPNYCRVCKLRVSTKSHDCKRRRRSI 89
+ +SF + PNY + C L +S DC R +
Sbjct: 422 LSLSFNNLPNYLKTCLLYLSIFPEDCIIERNMV 454
>10_02_0200 -
6672743-6673717,6676257-6676634,6677017-6677301,
6677420-6677570,6677696-6677930,6678689-6678764
Length = 699
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 198 ILHIYVCPLNHNRIIVEYANSESVQ 124
ILH+ +CP RI V +N +V+
Sbjct: 493 ILHVLICPFEKLRIFVNISNRRTVR 517
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 187 IRMSFKSQPNYCRVCKLRVSTKSHDCKRRRRSIYSYRVFRGSVLQRGQNRNGEPAN 20
+ +SF P + + C L S D +R + + G V+QRGQ+ E A+
Sbjct: 416 LSISFMYLPRHLKNCFLYCSMFPQDYIFKRELLIKLWIVEGFVIQRGQSTLEEVAD 471
>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
Length = 336
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 181 MSFKSQPNYCRVCKLRVSTKSHDCKRRRRSIYSY--RVFRGSV 59
M+ S+P C+V LRVS CK++ + + + VFR V
Sbjct: 1 MASGSEPIECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDV 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,753,250
Number of Sequences: 37544
Number of extensions: 167490
Number of successful extensions: 507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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