Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1e24
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065604-1|BAC05832.1| 359|Homo sapiens seven transmembrane hel... 32 2.4
U77457-1|AAC13544.1| 161|Homo sapiens LIM-homeodomain protein L... 31 3.2
BC113491-1|AAI13492.1| 372|Homo sapiens LIM homeobox transcript... 31 3.2
BC112120-1|AAI12121.1| 372|Homo sapiens LIM homeobox transcript... 31 3.2
BC069601-1|AAH69601.1| 372|Homo sapiens LIM homeobox transcript... 31 3.2
BC069588-1|AAH69588.1| 377|Homo sapiens LMX1B protein protein. 31 3.2
AL161908-2|CAH70295.1| 372|Homo sapiens LIM homeobox transcript... 31 3.2
AL161908-1|CAH70294.1| 402|Homo sapiens LIM homeobox transcript... 31 3.2
AL161731-2|CAI40918.1| 372|Homo sapiens LIM homeobox transcript... 31 3.2
AL161731-1|CAI40917.1| 402|Homo sapiens LIM homeobox transcript... 31 3.2
AF059575-1|AAC27294.1| 379|Homo sapiens LIM homeodomain protein... 31 3.2
AF057135-1|AAC39738.1| 372|Homo sapiens LIM homeodomain protein... 31 3.2
>AB065604-1|BAC05832.1| 359|Homo sapiens seven transmembrane helix
receptor protein.
Length = 359
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +3
Query: 483 KLIHHYSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKLLETTFDDYT 629
K+IHHYS S SD+ ++I LL S H L L F YT
Sbjct: 172 KIIHHYSYEMPSLLPLSCSDISRSLIVLLCSTLLHGLGNFL-LVFLSYT 219
>U77457-1|AAC13544.1| 161|Homo sapiens LIM-homeodomain protein
LMX1B/LMX1.2 protein.
Length = 161
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 1 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 32
>BC113491-1|AAI13492.1| 372|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 372
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
>BC112120-1|AAI12121.1| 372|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 372
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
>BC069601-1|AAH69601.1| 372|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 372
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
>BC069588-1|AAH69588.1| 377|Homo sapiens LMX1B protein protein.
Length = 377
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 93 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 124
>AL161908-2|CAH70295.1| 372|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 372
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
>AL161908-1|CAH70294.1| 402|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 402
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 118 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 149
>AL161731-2|CAI40918.1| 372|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 372
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
>AL161731-1|CAI40917.1| 402|Homo sapiens LIM homeobox transcription
factor 1, beta protein.
Length = 402
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 118 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 149
>AF059575-1|AAC27294.1| 379|Homo sapiens LIM homeodomain protein
protein.
Length = 379
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
>AF057135-1|AAC39738.1| 372|Homo sapiens LIM homeodomain protein
LMX1B protein.
Length = 372
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 711 CGRKASPTEIARRPTACPFEPASFAVCTCSRQ 616
C K +PTE R C + F C C RQ
Sbjct: 95 CMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,239,979
Number of Sequences: 237096
Number of extensions: 1559462
Number of successful extensions: 3433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3433
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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