Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e24
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF318273-1|AAK13421.1| 1220|Drosophila melanogaster metabotropic...    29   6.4  
AF145639-1|AAD38614.1| 1221|Drosophila melanogaster BcDNA.GH0731...    29   6.4  
AE014297-3037|AAF55916.1| 1221|Drosophila melanogaster CG6706-PB...    29   6.4  
AE014297-3036|AAN13882.1| 1220|Drosophila melanogaster CG6706-PA...    29   6.4  
L77907-1|AAC37264.1| 1883|Drosophila melanogaster chromodomain-h...    29   8.5  
BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p pro...    29   8.5  
AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p pro...    29   8.5  
AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA ...    29   8.5  

>AF318273-1|AAK13421.1| 1220|Drosophila melanogaster metabotropic
            GABA-B receptor subtype2 protein.
          Length = 1220

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 719  KSTVVERHLQQRSHGVQQRVRLNLR-HLRSARVVVKRGFEQFEQRMILFRSQQKYHGHDH 543
            K ++VE H    +  + Q ++  L+ HL+  + + ++  +Q + + +  + QQ+ H H H
Sbjct: 863  KQSIVEHHSHAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHHRH 922

Query: 542  V 540
            +
Sbjct: 923  L 923


>AF145639-1|AAD38614.1| 1221|Drosophila melanogaster BcDNA.GH07312
            protein.
          Length = 1221

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 719  KSTVVERHLQQRSHGVQQRVRLNLR-HLRSARVVVKRGFEQFEQRMILFRSQQKYHGHDH 543
            K ++VE H    +  + Q ++  L+ HL+  + + ++  +Q + + +  + QQ+ H H H
Sbjct: 864  KQSIVEHHSHAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHHRH 923

Query: 542  V 540
            +
Sbjct: 924  L 924


>AE014297-3037|AAF55916.1| 1221|Drosophila melanogaster CG6706-PB,
            isoform B protein.
          Length = 1221

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 719  KSTVVERHLQQRSHGVQQRVRLNLR-HLRSARVVVKRGFEQFEQRMILFRSQQKYHGHDH 543
            K ++VE H    +  + Q ++  L+ HL+  + + ++  +Q + + +  + QQ+ H H H
Sbjct: 864  KQSIVEHHSHAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHHRH 923

Query: 542  V 540
            +
Sbjct: 924  L 924


>AE014297-3036|AAN13882.1| 1220|Drosophila melanogaster CG6706-PA,
            isoform A protein.
          Length = 1220

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 719  KSTVVERHLQQRSHGVQQRVRLNLR-HLRSARVVVKRGFEQFEQRMILFRSQQKYHGHDH 543
            K ++VE H    +  + Q ++  L+ HL+  + + ++  +Q + + +  + QQ+ H H H
Sbjct: 863  KQSIVEHHSHAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHHRH 922

Query: 542  V 540
            +
Sbjct: 923  L 923


>L77907-1|AAC37264.1| 1883|Drosophila melanogaster
            chromodomain-helicase-DNA-bindingprotein protein.
          Length = 1883

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 692  QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 579
            Q R+H + Q+ ++N+  L +AR V ++  E+ +Q+M+L
Sbjct: 943  QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980


>BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p protein.
          Length = 1645

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 692  QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 579
            Q R+H + Q+ ++N+  L +AR V ++  E+ +Q+M+L
Sbjct: 943  QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980


>AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p
           protein.
          Length = 1101

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 692 QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 579
           Q R+H + Q+ ++N+  L +AR V ++  E+ +Q+M+L
Sbjct: 411 QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 448


>AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA
            protein.
          Length = 1883

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 692  QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 579
            Q R+H + Q+ ++N+  L +AR V ++  E+ +Q+M+L
Sbjct: 943  QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,988,551
Number of Sequences: 53049
Number of extensions: 557124
Number of successful extensions: 1832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)