Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e23
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    31   1.0  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       31   1.0  
AF067216-5|AAC17523.2|  135|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    29   4.1  
AC199158-8|ABO33283.1|  439|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC199158-4|ABO33286.1|  439|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    29   4.1  
AF106577-16|AAC78188.1|  369|Caenorhabditis elegans Hypothetical...    28   7.1  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    27   9.4  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    27   9.4  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    27   9.4  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    27   9.4  

>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 262 SCLVKFTNSTDKNYVA 215
           SCL KFTNSTDKN ++
Sbjct: 467 SCLEKFTNSTDKNVIS 482


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 262 SCLVKFTNSTDKNYVA 215
           SCL KFTNSTDKN ++
Sbjct: 483 SCLEKFTNSTDKNVIS 498


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 262 SCLVKFTNSTDKNYVA 215
           SCL KFTNSTDKN ++
Sbjct: 476 SCLEKFTNSTDKNVIS 491


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 168 LLTSTPAM-YSTSPSSSAT*FLSVLFVNFTKHDCLGPTTSLPFNLFTLLLYKQMGSAMCG 344
           +L++T A+  S   +S  + F  +L   F   DC  PTT L   +F  L+Y  MG+ + G
Sbjct: 392 ILSNTKAVKVSHGVASFGSSFSLILLAFFV--DCSNPTTGL---IFFCLMYSSMGTFVSG 446

Query: 345 MYGS 356
            Y S
Sbjct: 447 FYTS 450


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 262 SCLVKFTNSTDKNYVA 215
           SCL KFTNSTDKN ++
Sbjct: 476 SCLEKFTNSTDKNVIS 491


>AF067216-5|AAC17523.2|  135|Caenorhabditis elegans Hypothetical
           protein C35E7.7 protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -1

Query: 550 TPVPKLIVSLTNLKNAMPVFEYKE-NSCVSGLPNGYSVA----VNKSILLNNKMF 401
           T  P++    T  +   PV  Y E  S V+  PNGYSVA      K IL+N+ ++
Sbjct: 42  TEYPEIAKQYTEDQFLAPVVTYPECKSIVTTCPNGYSVAGFIVETKKILVNSNIY 96


>Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical
           protein F26D2.14 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 283 ACPSTCSLCCCINKWAAQCAE 345
           ACP TC+LCC  + +  + AE
Sbjct: 101 ACPKTCALCCMTSAYNCRNAE 121


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/113 (22%), Positives = 46/113 (40%)
 Frame = +3

Query: 237 LFVNFTKHDCLGPTTSLPFNLFTLLLYKQMGSAMCGMYGSSAVMSLLSRTNVHNLNILLL 416
           + +NF   DC  P + L F +F +L+  + G   C  +  + +M+L+        + +  
Sbjct: 90  MILNFYGSDCTPPNSFLTFQIFWVLMSIRDGVVRCSTW-LTVLMALIRFLVSKYASEVRY 148

Query: 417 SKMDLFTATE*PFGKPDTQLFSLYSNTGMAFFRLVRDTINLGTGVV*NKCIKL 575
            KM +F      FG   +      S+   + F L    + +GT    N C  +
Sbjct: 149 QKMSMFI-----FGFKSSAFSVFISSLMSSCFYLCIKFVEIGTWTPANCCTNI 196


>AC199158-8|ABO33283.1|  439|Caenorhabditis elegans Hypothetical
           protein AC8.10 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 646 IQCTIVENDDVKSLMSKLEQYYYCNFIHLFHTTPVPK 536
           I C  +EN  VK    +  +Y Y N+  +  T  VP+
Sbjct: 79  IHCVELENGTVKKQCLRFREYVYVNYFSISDTYEVPE 115


>AC199158-4|ABO33286.1|  439|Caenorhabditis elegans Hypothetical
           protein AC8.3 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 646 IQCTIVENDDVKSLMSKLEQYYYCNFIHLFHTTPVPK 536
           I C  +EN  VK    +  +Y Y N+  +  T  VP+
Sbjct: 79  IHCVELENGTVKKQCLRFREYVYVNYFSISDTYEVPE 115


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 268 KQSCLVKFTNSTDKNYVALDDGLVLYMAGVLVSNAKIN 155
           K+S +  F NST  NY  L+ GL+ Y     + + K N
Sbjct: 251 KKSSIQMFINSTHSNYAVLNRGLLDYFPTFDIDDLKSN 288


>AF106577-16|AAC78188.1|  369|Caenorhabditis elegans Hypothetical
           protein F46F5.10 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 268 KQSCLVKFTNSTDKNYVALDDGLVLYMAGVLVSNAKIN 155
           K S +  F NST  NY  L+ GL+ Y     ++  K N
Sbjct: 239 KNSSIFMFLNSTHSNYAVLNYGLLDYFPTYDLNELKTN 276


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 568 IHLFHTTPVPKLIVSLTNLKNAMPVFEYKENSCVSGLPNGYSVAVNKSILL 416
           I +FH   + KL++ L NL   M   E +E +    + NG +V  N + +L
Sbjct: 429 IDIFHIWDLDKLVLQLLNLDKIMET-EARETAEKRAMRNGINVVNNNNDVL 478


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 568 IHLFHTTPVPKLIVSLTNLKNAMPVFEYKENSCVSGLPNGYSVAVNKSILL 416
           I +FH   + KL++ L NL   M   E +E +    + NG +V  N + +L
Sbjct: 293 IDIFHIWDLDKLVLQLLNLDKIMET-EARETAEKRAMRNGINVVNNNNDVL 342


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 568 IHLFHTTPVPKLIVSLTNLKNAMPVFEYKENSCVSGLPNGYSVAVNKSILL 416
           I +FH   + KL++ L NL   M   E +E +    + NG +V  N + +L
Sbjct: 447 IDIFHIWDLDKLVLQLLNLDKIMET-EARETAEKRAMRNGINVVNNNNDVL 496


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 568 IHLFHTTPVPKLIVSLTNLKNAMPVFEYKENSCVSGLPNGYSVAVNKSILL 416
           I +FH   + KL++ L NL   M   E +E +    + NG +V  N + +L
Sbjct: 429 IDIFHIWDLDKLVLQLLNLDKIMET-EARETAEKRAMRNGINVVNNNNDVL 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,346
Number of Sequences: 27780
Number of extensions: 349674
Number of successful extensions: 1142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)