Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e23
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.22 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.22 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.6  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 198 CCTWPVCW*ATQKLIGCTTADGTKLKRAPTAILTF 94
           CC W +CW  T   I         +K  P   LT+
Sbjct: 488 CCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 522


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 198 CCTWPVCW*ATQKLIGCTTADGTKLKRAPTAILTF 94
           CC W +CW  T   I         +K  P   LT+
Sbjct: 541 CCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 575


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 653 FHYSMYDRRKR*RQIAH 603
           FHY+ Y  R+R  +IAH
Sbjct: 27  FHYNRYLTRRRRIEIAH 43


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 653 FHYSMYDRRKR*RQIAH 603
           FHY+ Y  R+R  +IAH
Sbjct: 289 FHYNRYLTRRRRIEIAH 305


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 653 FHYSMYDRRKR*RQIAH 603
           FHY+ Y  R+R  +IAH
Sbjct: 27  FHYNHYLTRRRRIEIAH 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,449
Number of Sequences: 438
Number of extensions: 4884
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)