Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e22
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   1.8  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   1.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   4.1  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   5.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   5.5  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    24   7.2  

>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 115 LLLDLPLFCVYLYFVFTFILCITLWYCSKI 204
           LLL +PLF    Y+ F  +  ++L+YC+ +
Sbjct: 56  LLLIVPLFLYPEYWAFKLVELLSLFYCAYV 85


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 131 LYFVFTFILCLPLSCV*LYGIVVKYVLALRFIIIFQI*RGCS 256
           L F    +L  PLS V  YG +  Y + L   ++FQI  GCS
Sbjct: 155 LGFAAGSVLFAPLSEV--YGRLPLYSVTLVIFVVFQIGGGCS 194


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 7/36 (19%), Positives = 22/36 (61%)
 Frame = +1

Query: 118 LLDLPLFCVYLYFVFTFILCITLWYCSKICVSFKIY 225
           + + P++  ++  +FT  L I +W+   + V+++++
Sbjct: 329 IFNKPIYIAFIILLFTLQLLIYIWFGMIVKVAYRVF 364


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 160 TQNKGKHKIKVNPIKVFLSTTLHLRGSLLELAALQYASLVADG 32
           T   GKH   + P + F+  T+  +   L LA   + SLV +G
Sbjct: 337 TDMLGKHAKDLTPEQEFILETIRSKKKCLALARKIWYSLVPEG 379


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 VDRNTFIGFTFILCLPLFCVYLYL 173
           ++R  + G  F++C PL+CV  ++
Sbjct: 17  LERFQWRGAIFLVCYPLYCVVCFV 40


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 118 KVFLSTTLHLRGSLLELAALQYASLVADGYP 26
           K FL T   +RG   E  AL   +L   GYP
Sbjct: 821 KCFLGTASRIRGVTFEHIALDAFALHERGYP 851


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 118  LLDLPLFCVYLYFVFTFILCI 180
            LLDLP+F VYL  V T I  I
Sbjct: 1177 LLDLPMFQVYLGCVDTLIQTI 1197


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 103 WIGILLLDLPLFCVYLYFVFTFILCITLWYCSKICVSF 216
           +I  L++ + ++C   YFV+   +   LWY +   +SF
Sbjct: 578 FIFALVVSMAIYCTAAYFVWQKKVERKLWYLTNSKLSF 615


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 110 EYFYWIYLYFVFTFILCLPLSCV 178
           E ++W++LY      +C  L C+
Sbjct: 200 EGYWWVFLYTTCVLAMCCILCCL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,932
Number of Sequences: 5004
Number of extensions: 36097
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)