Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e22
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.13 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   2.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   3.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   6.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          20   8.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 0.13
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 28  DSHPQPVMHTGVQQARANYP*DVM*WIGILLLDLPLF 138
           D   Q  M +G      NYP DV  W G+  + +P +
Sbjct: 51  DERRQAAMQSGEYDHTKNYPFDVDQWRGMTFVTVPRY 87


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 99  VVDRNTFIGFTFILCL--PLFCV 161
           V + +T+IGF F+L L  P+F +
Sbjct: 59  VTNSDTYIGFLFVLGLIVPVFTI 81


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 125 IYLYFVFTFILCLPLSCV*LY 187
           I++  +FTF  C+P+  +  Y
Sbjct: 210 IFVATIFTFSYCIPMILIIYY 230


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 LPLFCVYLYFVFTFILCITLWY 192
           L  + +++YFV  F++  + W+
Sbjct: 217 LVCYGIWVYFVPLFLIIYSYWF 238


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 145 KHKIKVNPIKVFL 107
           KH +K NP KV L
Sbjct: 178 KHAVKFNPAKVKL 190


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 191 YHKVIHKIKVNTK*R*TQNKGKSNKSIPIHYI 96
           Y K     K  ++ R  + + + ++ IP HYI
Sbjct: 289 YRKYRETSKERSRDRRERGRSREHRIIPSHYI 320


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 LPLFCVYLYFVFTFILCITLWY 192
           L  + +++YFV  F++  + W+
Sbjct: 93  LVCYGIWVYFVPLFLIIYSYWF 114


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 123 GFTFILCLPLFCVYLY 170
           G + +LC+P + +Y++
Sbjct: 536 GLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 123 GFTFILCLPLFCVYLY 170
           G + +LC+P + +Y++
Sbjct: 589 GLSSMLCIPGYMIYIW 604


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 319 PLTLCTITAW*AKRGGVSFPYTTPP 245
           P T CT   W       +F Y++ P
Sbjct: 197 PATCCTTXWWSXXTVAXTFKYSSKP 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,294
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)