Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e15
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    28   1.6  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    28   1.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   6.3  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   6.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   8.3  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   8.3  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 520 GDFERSHSPSVWSEENKRS*SG 585
           GD+ R HSP+ W  E +R  SG
Sbjct: 281 GDYHRFHSPTDWVVERRRHFSG 302


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 520 GDFERSHSPSVWSEENKRS*SG 585
           GD+ R HSP+ W  E++R  SG
Sbjct: 367 GDYHRFHSPADWVIESRRHFSG 388


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 253  IRVVMSTAPCF--YIYCLSAWYNTL*YNLFNLF 161
            I +V    PC    +Y L+AWYNT     F+ F
Sbjct: 4505 INLVQKILPCSAGQMYALNAWYNTEKKKYFHTF 4537


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 254 SEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFK 376
           +E  A LL  +G    +DKW    W         PA+  F+
Sbjct: 429 AEPTAQLLPPDGLAWIDDKWSISPWTFTDTFWAQPAKTQFR 469


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 578 KAGGASLLLPKVRKNPLVEIIAVNTGC 658
           K  G S +L ++RK   + I+ V TGC
Sbjct: 375 KVHGQSFMLHQIRKMIALAILVVRTGC 401


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 371 NDPQPGSLQYMNSTTKVAHPICLLSI 294
           NDP P + +  N    +A PICL  I
Sbjct: 148 NDPTPFNARSANLKNYIAFPICLFVI 173


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 128 VRSKKREKKDPEQIEKVILESVVP 199
           V+  ++EK DP ++ + +LES+ P
Sbjct: 816 VKKNEKEKDDPMRLAQQLLESLAP 839


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 257 EYMAGLLAANGYKLTEDKW 313
           E +AGL A +G K  +DKW
Sbjct: 23  EIVAGLEAVDGQKFFQDKW 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,109
Number of Sequences: 5004
Number of extensions: 64145
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)