Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1e15
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 180 1e-45
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299 47 1e-05
02_04_0294 - 21658515-21658573,21658642-21659047,21659166-216593... 31 0.93
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 29 2.8
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372... 28 6.6
09_04_0438 + 17590959-17591267,17592137-17592227,17592405-175925... 28 6.6
08_01_1050 - 10649434-10651917 28 6.6
06_02_0229 - 13282048-13282554,13282585-13282719 28 8.7
05_04_0265 - 19547363-19547401,19547688-19547857,19548451-195486... 28 8.7
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 180 bits (438), Expect = 1e-45
Identities = 92/159 (57%), Positives = 111/159 (69%)
Frame = +2
Query: 248 SDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAG 427
SDSEYM+G L+A GY +TE+ A LWL+N+CTVK+P++ I +S +VVAG
Sbjct: 59 SDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAG 118
Query: 428 CVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASLLLP 607
CVPQG+ L G+S++GVQQIDR+VEVVEETLKGH VRL RKT SL LP
Sbjct: 119 CVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL-SRKTL------PSLDLP 171
Query: 608 KVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYPPE 724
KVRKN +EI+ +N GCL CTYCKTKHARG LGSY E
Sbjct: 172 KVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIE 210
>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
Length = 556
Score = 47.2 bits (107), Expect = 1e-05
Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 27/219 (12%)
Frame = +2
Query: 143 REKKDPEQIEKVILES--VVPGTQTIYVKTWGCAHNNSDSEYMAGLLAANGY-KLTEDKW 313
R + P + LES V IY +T+GC N +D E + ++ GY ++ D
Sbjct: 26 RRRYSPAPLAPSPLESGPVTASKGRIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPE 85
Query: 314 DAQLWLLNSCTVKSPAED--------------HFKNEIELGQSRGIH---VVVAGCVPQG 442
A++ +N+C ++ AE +K + G+SR + + V GC+ +
Sbjct: 86 SAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRQWKANVAAGRSRSLRPPKIAVLGCMAER 145
Query: 443 APKSGYLHGLSIVGV-------QQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASLL 601
K L +V V + + R+++ V+ KG L +T A +
Sbjct: 146 L-KEKILDSDKMVDVVCGPDAYRDLPRLLQEVDYGQKGINT-LLSLEETY------ADIT 197
Query: 602 LPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYP 718
++ N + +++ GC N C++C RG S P
Sbjct: 198 PVRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRP 236
>02_04_0294 -
21658515-21658573,21658642-21659047,21659166-21659307,
21659411-21659626,21659735-21659830,21660180-21660295,
21660501-21660604,21660970-21661067,21661167-21661272,
21661386-21661473
Length = 476
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 691 VLGLAVCAL-IQAARVHGYDLD*GILSHFGQEQ*SP 587
++ + CA+ + R+HGYD+ +L+HF +E P
Sbjct: 75 IMDMETCAMAFRILRMHGYDVSSDVLAHFSEESRFP 110
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 416 VVAGCVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQR 562
V+ G GA G+ VG+QQ + + ++ L G+ V LFG++
Sbjct: 510 VMVGSPDSGAYMERRTFGIQTVGIQQGQQPMHLLNNDLWGYQVGLFGEK 558
>11_01_0484 -
3720376-3720671,3721209-3721767,3722209-3722640,
3723126-3723485
Length = 548
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 311 WDAQLWLLNSCTVKSPAEDHFKNEIELGQSR 403
W LWLL + +K+ K IEL +SR
Sbjct: 449 WPVLLWLLTAACIKTGRPQMAKRAIELAESR 479
>09_04_0438 +
17590959-17591267,17592137-17592227,17592405-17592559,
17592866-17592893,17592953-17593091,17593587-17593668
Length = 267
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 563 SSDQTDGLCDLSKSPPQPPQFCQSV 489
S +TD LCDL KS + P F Q V
Sbjct: 97 SDGETDKLCDLLKSTFESPNFFQKV 121
>08_01_1050 - 10649434-10651917
Length = 827
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +2
Query: 287 GYKLTEDKWDAQLWLLNS-------CTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQ 439
G + TED W W N+ T + A F+++I LG +R + + GC+PQ
Sbjct: 609 GVQTTED-WSTDTWEDNNGGVATENITPEGTATWMFRHKIALGAARALAFLHHGCIPQ 665
>06_02_0229 - 13282048-13282554,13282585-13282719
Length = 213
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 563 SSDQTDGLCDLSKSPPQPPQFCQSVVHQLY 474
+SD ++ + S SPP PP VVHQ Y
Sbjct: 162 NSDGSEYYDERSVSPPSPPHLPAPVVHQPY 191
>05_04_0265 -
19547363-19547401,19547688-19547857,19548451-19548661,
19549671-19549982
Length = 243
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 436 AGRTKKWLPTRTQYSWCTTD*QNCGGCGGDFERSHSPSVWSEENKRS*SGWGFTAPAQSA 615
AGR ++ P R +W ++D + GG + + +V + SG G +A + +
Sbjct: 30 AGRRRR-RPARLVLAWASSDGSDGGGAAAGAVAAEASAVGESKEGEVASGGGSSAESSAE 88
Query: 616 KESLSRDHSREHGLPESV 669
K+ D E L ++V
Sbjct: 89 KKPAPVDPKIEKELKKAV 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,589,947
Number of Sequences: 37544
Number of extensions: 456478
Number of successful extensions: 1159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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