Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1e15
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084268-1|AAM81103.2| 425|Caenorhabditis elegans Hypothetical ... 121 6e-28
AC084268-3|AAK19005.5| 397|Caenorhabditis elegans Hypothetical ... 63 2e-10
U23172-3|AAC46526.1| 547|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AC024208-2|AAF36055.1| 204|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z80217-8|CAB02294.1| 207|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 5.9
U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat debr... 28 5.9
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 28 5.9
AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat debran... 28 5.9
AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine re... 28 7.8
>AC084268-1|AAM81103.2| 425|Caenorhabditis elegans Hypothetical
protein Y92H12BL.1 protein.
Length = 425
Score = 121 bits (291), Expect = 6e-28
Identities = 59/100 (59%), Positives = 75/100 (75%)
Frame = +2
Query: 419 VAGCVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEETLKGHTVRLFGQRKTNGRKAGGASL 598
+AGCV Q AP +L +SIVGV+QIDRIVEVV ETLKG+ VRL + + + A L
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPD------AVL 54
Query: 599 LLPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGSYP 718
LPK+RKN L+E+++++TGCLN CTYCKTK ARG+L SYP
Sbjct: 55 SLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYP 94
>AC084268-3|AAK19005.5| 397|Caenorhabditis elegans Hypothetical
protein Y92H12BL.4 protein.
Length = 397
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = +2
Query: 122 VSVRSKKREKKDPEQIEKVILESVVPGT-QTIYVKTWGCAHNNSDSEYMAGLLAANGYKL 298
+ +R++K+ K+ +Q + ++S+VPG Q ++V+TWGC+HN SDSEYM+GLL GY +
Sbjct: 20 IKIRTRKQVPKE-QQPDDANVDSMVPGVGQKVWVRTWGCSHNTSDSEYMSGLLQQAGYDV 78
Query: 299 TE 304
+
Sbjct: 79 VK 80
>U23172-3|AAC46526.1| 547|Caenorhabditis elegans Hypothetical
protein F25B5.5 protein.
Length = 547
Score = 54.0 bits (124), Expect = 1e-07
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Frame = +2
Query: 206 QTIYVKTWGCAHNNSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEI 385
+T+ T+GC N SD E + ++ G+ ++ K +A + LL +C+++ AE N++
Sbjct: 79 RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138
Query: 386 ELGQSRGIH----VVVAGCVPQGAPKSGYLHGLSIVGV-------QQIDRIVEVVEETLK 532
+L +S ++ V V GC+ + + L ++V + + + R+V V
Sbjct: 139 KLIRSNSVNKGQIVGVLGCMAERV-RHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSN 197
Query: 533 GHTVRLFGQRKTNGRKAGGASLLLPKVRKNPLVEIIAVNTGCLNQCTYCKTKHARGELGS 712
G V+L + A + + K + I+ GC N CTYC RG S
Sbjct: 198 GINVQL----SLDETYADVQPIRVDSASKTAFISIM---RGCDNMCTYCVVPFTRGRERS 250
Query: 713 YPPE 724
P E
Sbjct: 251 RPIE 254
>AC024208-2|AAF36055.1| 204|Caenorhabditis elegans Hypothetical
protein Y75B7B.2 protein.
Length = 204
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 587 HPLYDRLFSSDQTDGLCDLSKSPPQPPQFCQSVVHQLY*VRVGSHFLVRPAVHSPLQQHV 408
+PL + + + LC L K P P Q H + VR+G L P++ H
Sbjct: 40 NPLTKLIEDNVEYSKLCQLCKIPDGPISESQLEFHLVTAVRMGHRELASALAQGPVRMH- 98
Query: 407 CHDSDQA 387
C+D +A
Sbjct: 99 CNDLHRA 105
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 599 AVKPHPLYDRLFSSDQTDGLCDLSKSPPQPPQFCQSVVHQL 477
A KP +L D T G C + +PP PQ C+ + L
Sbjct: 354 AAKPVSAGGKLVEPDSTWGDCTMCSNPPIKPQGCKKCLQFL 394
>Z80217-8|CAB02294.1| 207|Caenorhabditis elegans Hypothetical
protein F37B1.8 protein.
Length = 207
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 140 KREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEYMAG 271
KR K E++ KV+ ESVVP ++ Y K S S ++ G
Sbjct: 109 KRGGKSEEEVAKVVSESVVPAMES-YFKLLNGLLERSKSGFLIG 151
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 184 RECCTRH---SNNICKNMGLCS*QLGF 255
R+ C+RH + +CKN G C Q G+
Sbjct: 447 RQLCSRHPCKNGGVCKNTGYCECQYGY 473
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 184 RECCTRH---SNNICKNMGLCS*QLGF 255
R+ C+RH + +CKN G C Q G+
Sbjct: 447 RQLCSRHPCKNGGVCKNTGYCECQYGY 473
>U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat
debranching enzyme protein.
Length = 500
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 134 SKKREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY--MAGLLAANGYK 295
S + +DP V+ + V G + I + GC+H D+ Y M + NGYK
Sbjct: 15 SHEGSHQDPAPETLVVEKEVNNGEKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYK 70
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 184 RECCTRH---SNNICKNMGLCS*QLGF 255
R+ C+RH + +CKN G C Q G+
Sbjct: 447 RQLCSRHPCKNGGVCKNTGYCECQYGY 473
>AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat
debranching enzyme relatedprotein 1 protein.
Length = 500
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 134 SKKREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY--MAGLLAANGYK 295
S + +DP V+ + V G + I + GC+H D+ Y M + NGYK
Sbjct: 15 SHEGSHQDPAPETLVVEKEVNNGEKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYK 70
>AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine
receptor, class x protein104 protein.
Length = 279
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 154 FFLPLFRSDAYILPASVTLFRGYILGRYQIFYVVYNFITNTWHRQILFCY 5
FFL L ++ Y+L +S T+ IL Y ++ NF + + +L Y
Sbjct: 32 FFLKLQKTSFYVLCSSKTISNSIILFAYLLYVGPINFFYSGFGSAVLSSY 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,834
Number of Sequences: 27780
Number of extensions: 385502
Number of successful extensions: 1161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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