Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1e14
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 184 1e-47
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 29 0.74
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.3
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 27 3.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.2
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 9.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.1
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 184 bits (448), Expect = 1e-47
Identities = 99/223 (44%), Positives = 129/223 (57%), Gaps = 1/223 (0%)
Frame = +2
Query: 65 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 241
M D+ + GL LN +L +KS++ GY PSQAD VF+ VG AP A P+ RWY QI
Sbjct: 1 MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60
Query: 242 ASYTPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 421
A+Y A T P +DLFGS
Sbjct: 61 ATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERV 112
Query: 422 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 601
+ Y KK+ KP + KS + LDVKPWDDET M E+E VR+I+M+GL+WG SKLVPVG+
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171
Query: 602 GINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 730
G+NK QI V+EDDKVS++ L E+++ FED+VQS DIAA +K+
Sbjct: 172 GVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 754 NITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 599
NITC LD + N N +Y + + I ++ L D H FIY I
Sbjct: 82 NITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Frame = -1
Query: 772 EKVALINITCYGCLDFVKCSN-VNRLYKI-FKF----------LNFFCQQINRNFVVLDD 629
+ ++L+ C+ + +KCSN VN Y + F F LN+ Q+I N ++L +
Sbjct: 106 DAISLLVARCFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLNGLILGN 165
Query: 628 THNL 617
+HN+
Sbjct: 166 SHNV 169
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 286 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 176
G L S F ++ + +I+PS +G GR + LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 98 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 256
L+ + YL++ Y T Q + Q+F PA L W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 583 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 476
FG S HF+ Y VF IG I P W++ N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 605 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 727
INK Q+M E ++ ++DLL++ EF + + D+ K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 41 KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 139
K TLK + V DVKT G + N E Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 297 PPVLNPRLPPQQRKTTMTT 353
PPVL P LPP Q T T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,102
Number of Sequences: 5004
Number of extensions: 58398
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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