Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e08
         (139 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   1.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   1.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   4.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    19   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    19   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    19   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   7.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              19   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   7.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       18   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    18   9.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      18   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   9.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 96  YFFKYKIVQPCDERSQF-LPG 37
           YF +YK +QP   +S+  +PG
Sbjct: 430 YFLRYKKLQPQYSQSELQMPG 450


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 96  YFFKYKIVQPCDERSQF-LPG 37
           YF +YK +QP   +S+  +PG
Sbjct: 430 YFLRYKKLQPQYSQSELQMPG 450


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   FFIYLSIMSASWQELASLITRLNNFVFKKIYCI 105
           FF  L++++   Q+  S   +   +V K+++CI
Sbjct: 8   FFTILALINVKAQDDISKFLKDRPYVQKQLHCI 40


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 35  HPGRNWLLSSQG 70
           HP RN+ +S  G
Sbjct: 352 HPSRNFTMSEDG 363


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 73  NNFVFKKIYC 102
           NN  +KK+YC
Sbjct: 92  NNNNYKKLYC 101


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 73  NNFVFKKIYC 102
           NN  +KK+YC
Sbjct: 92  NNNNYKKLYC 101


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 73  NNFVFKKIYC 102
           NN  +KK+YC
Sbjct: 92  NNNNYKKLYC 101


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase
          protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 4  FFFIYLSIMSASWQEL 51
          F  + LSI+ A+W+ L
Sbjct: 7  FCLMALSIVDAAWKPL 22


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 95  IFLNTKLFSLVMREASSCQDADM 27
           IFL+    + ++ E S+  DAD+
Sbjct: 90  IFLDENGVNKLITECSAISDADL 112


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 40  WQELASLITRLNNFVF 87
           W+ +A +I RL  ++F
Sbjct: 471 WKYVAMVIDRLQLYIF 486


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
          protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 4  FFFIYLSIMSASWQEL 51
          F  + LSI+ A+W+ L
Sbjct: 7  FCLMALSIVDAAWKPL 22


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 92  FLNTKLFSLVMREASSCQDAD 30
           FLN  LF  V     +C D +
Sbjct: 403 FLNNYLFLAVGIVGGACSDVE 423


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 20   YQSCPHPG 43
            +Q+ PHPG
Sbjct: 1745 FQTFPHPG 1752


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 92  FLNTKLFSLVMREASSCQDADM 27
           +L+ +  S+   E  SC D+D+
Sbjct: 176 YLDNQEVSMENTENKSCTDSDI 197


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 58  LITRLNNFVFKKIYC 102
           L TR  +F+F+ ++C
Sbjct: 296 LATRYIDFLFQVLHC 310


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 17  IYQSCPHPGRNW 52
           + Q+CP P   W
Sbjct: 260 VAQACPTPEYRW 271


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 17  IYQSCPHPGRNW 52
           + Q+CP P   W
Sbjct: 260 VAQACPTPEYRW 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,909
Number of Sequences: 438
Number of extensions: 375
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)