Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e07
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   3.3  
05_01_0493 + 4113869-4116728,4116859-4117370                           28   5.8  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   5.8  

>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 494 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 348
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 324 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 467
           +PP+D  LY  +   + D   +L  A++     S E+YR  + S  V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 126 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 215
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,534
Number of Sequences: 37544
Number of extensions: 275794
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)