Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e06
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    26   0.30 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   6.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.6  
AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       21   8.6  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 538 WLGPRTKPATPRSPEGSIFHRIK 470
           W  P  KP   RS  GSI+H +K
Sbjct: 155 WEFPENKPKKIRSKLGSIWHSVK 177


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 255 PPRGVVLRSSVHRLQGR 305
           PP+G ++ SS+H+ Q R
Sbjct: 132 PPQGQLVLSSMHKYQPR 148


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 532 GPRTKPATPRSPEGSI 485
           GP   P+TP  P GS+
Sbjct: 204 GPEPVPSTPYPPPGSL 219


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 118  IITIKMVAGGKQMNVRVTTMD 180
            IIT + V GG   ++RV T D
Sbjct: 988  IITAEEVPGGPPTSIRVETND 1008


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 429 LLYELIGDILRIEFGSEFELQW 364
           L + L GD+L +    E +L W
Sbjct: 145 LSFNLFGDLLTLFIKEELDLVW 166


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 627 LVLVGHSLRK*TVIGQESRPVQSGIVFSVSG 535
           L + GH L      G+   PV+   + S SG
Sbjct: 360 LTIQGHDLTLIATDGEPVHPVRVNTIISFSG 390


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 627 LVLVGHSLRK*TVIGQESRPVQSGIVFSVSG 535
           L + GH L      G+   PV+   + S SG
Sbjct: 360 LTIQGHDLTLIATDGEPVHPVRVNTIISFSG 390


>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 202 QQTTTGKQLFDQVVKTIGLREV 267
           Q+T  GK+LF+ +++T  +  V
Sbjct: 5   QRTGLGKRLFEHMLQTESIEPV 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,770
Number of Sequences: 336
Number of extensions: 3099
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)