Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1e06
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    30   1.4  
11_01_0788 + 6599962-6602700                                           29   3.1  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    29   3.1  
12_02_0189 + 15165485-15168694                                         28   5.5  
11_06_0338 + 22479804-22480651,22480764-22482954                       28   5.5  
04_04_1556 - 34380013-34380021,34381175-34381271,34381570-343816...    28   7.2  

>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 216  GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 73
            GG  LDR E E ++H R    H  +   H   + H H  D   S++ I+
Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 145 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTD 294
           G Q    ++ M+ EL+  ++     K L +Q+ K + LR VW   + YTD
Sbjct: 669 GMQAPKNLSNME-ELQ-TLETMQASKDLAEQLSKLLKLRRVWIDNISYTD 716


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 514  LASYAVQARHGEHNPALHGPGFLAN 588
            + SYA +++H E   +++GPG+L N
Sbjct: 1370 MTSYACRSKHSECVDSINGPGYLCN 1394


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 253  GLREVWFFG--LQYTDSKGDLTWIKLYKKVMQQDVKKEN 363
            G+++ W  G  L+Y +SK +L+W K+ K+VM      EN
Sbjct: 908  GIKD-WLNGCNLKYYESKLNLSWRKVLKEVMNNKESDEN 945


>11_06_0338 + 22479804-22480651,22480764-22482954
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 288 VLKTEEPHLAEADRLHNLIEELLPGGRLLD 199
           +++ +E  L E + LH  I +LL GGR+ D
Sbjct: 6   IMEKQEEALKEWEPLHESISKLLKGGRITD 35


>04_04_1556 -
           34380013-34380021,34381175-34381271,34381570-34381631,
           34382072-34382163,34382387-34382420,34383434-34383496,
           34383951-34383966,34385694-34385783,34386253-34386596
          Length = 268

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 577 IPARAERDCVLRVWLGPRTKPATPRSPEG 491
           +P R  RD  LR WL P +     + P+G
Sbjct: 132 LPNRTVRDVALRCWLRPSSSKDRRKKPDG 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,528,398
Number of Sequences: 37544
Number of extensions: 363290
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)