Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1e05
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 27 3.2
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013 27 3.2
05_03_0484 + 14599786-14602197 27 3.2
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 27 3.2
06_01_1000 - 7778907-7780721 27 5.6
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 27 5.6
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 5.6
02_01_0415 + 3037720-3039849 27 5.6
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 26 7.4
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 149 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAA 271
PVAP++ P + + ++ + PA + S+KN T AA
Sbjct: 7 PVAPASPSPSPAAAADGEEGEGPAPAAEDDSLKNDVYTAAA 47
>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
Length = 829
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 219 TEFFLFLLPLIEVGTYSVVDGATGNLSATVLNLAI 115
T F+FLL ++ VG YS V G A +L LAI
Sbjct: 258 TYVFVFLLVVLLVGFYSDVIGTNSFHGALMLGLAI 292
>05_03_0484 + 14599786-14602197
Length = 803
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 77 YDEVLT--RDFITKNMAKFKTVALKLPVAPSTTEYV-PTSISGSKKRKNSVPAKQRSSI 244
YD +L F +++ K L P+ P V P +SG K K +VPA R ++
Sbjct: 349 YDAILNGLEVFKLQDIGKKSLAGLNPPLPPQPKSDVNPKGVSGGGKSKGAVPASIRGAM 407
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -1
Query: 334 VFYLF*HICILCIIANH*KCWSRSS---VAAIFYRRSLFGRN*VFSFLAAAN 188
+FYLF C LC A R + A F R S GR + LAA N
Sbjct: 4 IFYLFSIFCCLCSCAQSQNISGRPDAVRIGAQFARNSTIGRVAAVAVLAAVN 55
>06_01_1000 - 7778907-7780721
Length = 604
Score = 26.6 bits (56), Expect = 5.6
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 56 APLLSSIYDEVLTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQR 235
APLLS+I ++L R + A+F +L AP+ + SI + R VP R
Sbjct: 99 APLLSAILSKLLARFSSPEPAARFLAASLAAG-APAPDVFAFNSILAALARVRDVPGMAR 157
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 104 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAA 271
IT+ MA ++ PV PST E PTS ++K + S+ + R T A
Sbjct: 394 ITRGMAPMHP-SIATPVRPSTAERRPTSKQMAQKHVGMATPSRPSTAERRPITREA 448
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 26.6 bits (56), Expect = 5.6
Identities = 20/99 (20%), Positives = 41/99 (41%)
Frame = +2
Query: 5 LYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLPVAPSTTEYVPT 184
+ + + NET + +AP S+ +D ++ + K+ + T L VA + T
Sbjct: 563 MQASMLEIYNETIRDLLAPGRSNNFDLSTSKQYTIKHDPQGNTTVTDLTVADVFSSADVT 622
Query: 185 SISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNT 301
S+ + SV Q + +R + + ++NT
Sbjct: 623 SLLAKASQSRSVGRTQMNEQSSRSHFVFTLKISGSNENT 661
>02_01_0415 + 3037720-3039849
Length = 709
Score = 26.6 bits (56), Expect = 5.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -2
Query: 192 LIEVGTYSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*----MLLSRGATLLLNVSFNK 25
+IEV Y V G G +S ++ L L + N S L+S G+ ++L+VSFN+
Sbjct: 70 IIEV--YLVSKGLEGQISPSLGELRSLLYLNLSYNLLSGGLPEELMSSGSIIVLDVSFNR 127
Query: 24 L 22
L
Sbjct: 128 L 128
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 149 PVAPSTTEYVPTSISGSKKRKNSVPAKQ 232
PVAP+T P KK+K PA Q
Sbjct: 125 PVAPATAAAAPGQPQPKKKKKQKEPAPQ 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,457,598
Number of Sequences: 37544
Number of extensions: 151880
Number of successful extensions: 357
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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