Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d24
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.7  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.9  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   5.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   6.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   6.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   6.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   6.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   6.9  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   6.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   6.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 96   KPTPYSPNFPASHGYVPPPEGEKPNESY 179
            +PT + P  P +    P PE  KP   Y
Sbjct: 1370 QPTEWHPPIPPTSEKPPLPEELKPQSGY 1397


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 261 LPGMQHGFQP-GFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 389
           LP   + F P G  P + PG +P  P  S +P  V   P  + P
Sbjct: 217 LPSDFYRFSPTGLIPPH-PGLSPHPPHLSSHPAIVTPGPKQELP 259


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 261 LPGMQHGFQP-GFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 389
           LP   + F P G  P + PG +P  P  S +P  V   P  + P
Sbjct: 109 LPSDFYRFSPTGLIPPH-PGLSPHPPHLSSHPAIVTPGPKQELP 151


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 538 ITVYLLFVSNPTKASNNSTF*CIISWSIMERYSK 437
           I +++ F  N     NN+T+ C+  W ++   SK
Sbjct: 142 ILLWISFFLNFMLHCNNTTWRCLYRWIVLYTLSK 175


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 420 SNCPRGLEYLSMIDQLIMHQKVE 488
           ++CP  L+YL M D+ + H ++E
Sbjct: 165 ASCPMNLQYLPM-DRQLCHIEIE 186


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 TPYSPNFPASHGYVPPPEGE 161
           TP  P+F  +H  + PP  E
Sbjct: 93  TPIVPHFAYNHNPLTPPNSE 112


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -1

Query: 647 EVVHNFHIERT*RSAAVSCAAIIILNRIIN----FLTNTVHNCVFVVCLEPNKSF 495
           E V++  IE+   +    C  ++ LN  IN     L ++     F++C E N+ F
Sbjct: 319 EQVYHLEIEKY-YNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSESNRKF 372


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 245 SWGTTPSGHAAWVPARISTWLSTRI 319
           SWG    G+  +VP  I+  L T I
Sbjct: 31  SWGAQRPGNGQFVPEDINPDLCTHI 55


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  HKPTPYSPNFPASHGYVPPPEGEKPNESY 179
           +K  P S N+     YV   +GE PN ++
Sbjct: 362 NKNHPNSENYINHQNYVQGYQGEHPNYNH 390


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  HKPTPYSPNFPASHGYVPPPEGEKPNESY 179
           +K  P S N+     YV   +GE PN ++
Sbjct: 310 NKNHPNSENYINHQNYVQGYQGEHPNYNH 338


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 270 NRRMKWKKEHKMASMNIVPYHMSPYGH 296


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 270 NRRMKWKKEHKMASMNIVPYHMSPYGH 296


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
 Frame = +3

Query: 255 QPLPGM---QHGFQPGFQPGYQPGFAPGYPQPSGYPVP 359
           QP PG      G + G  P +  G   G   P G P P
Sbjct: 44  QPDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYP 81


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 270 NRRMKWKKEHKMASMNIVPYHMSPYGH 296


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 226 NRRMKWKKEHKMASMNIVPYHMSPYGH 252


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 270 NRRMKWKKEHKMASMNIVPYHMSPYGH 296


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 58  NRRMKWKKEHKMASMNIVPYHMSPYGH 84


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 270 NRRMKWKKEHKMASMNIVPYHMSPYGH 296


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 324 PGYPQPSGYPVPVMQQPG 377
           P  P+P+    P++Q+PG
Sbjct: 87  PVAPEPAPLASPLVQEPG 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,722
Number of Sequences: 336
Number of extensions: 3837
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)