Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1d24
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 38 0.001
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.60
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.80
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.80
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 29 0.80
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 28 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.4
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 26 4.2
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 4.2
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 5.6
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 26 5.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 5.6
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 26 5.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 7.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 9.8
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 9.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.8
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 459 DQLIMHQKVELLEAFVGFETNNKYTVMNSVGQKVYYAIE 575
D LI+ +++E++ F+G+E N+Y ++N GQ + Y E
Sbjct: 77 DVLIVERQLEMMNVFLGYEQANRYVILNQQGQHLGYIAE 115
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 179 PHASSKRLSWPTTHSYATPRPTSWGTTPSGHAAWVPARIS 298
P S+ R S P+ HS A+P PTS S A+ PAR S
Sbjct: 1247 PSVSTPRSSVPSPHSNASPSPTS-----SSMASAAPARTS 1281
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 282 FQPGFQPGYQPGFAPGYPQ-PSGYPVPVMQQPGPQAPGGWMNMPQGLSNCPR 434
+ P QPGY P + P Y Q P P M + G Q + P + PR
Sbjct: 410 YGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQVSDQVVESPNSSTLSPR 461
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.7 bits (61), Expect = 0.80
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Frame = +3
Query: 252 AQPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLSN-C 428
A P P G P QP Y P YP Y PV QP A G + LSN
Sbjct: 98 AAPQPYPPQGGYPQ-QPYYYPNQPNYYPAQPAYAQPVYAQPATSARRGRSGV---LSNPM 153
Query: 429 PRGLEYLSMIDQLIMHQKVELLE--AFVGFETNNKYTVMNSVG 551
GL L ++ L MH+ E + V + +N Y + G
Sbjct: 154 VTGLGGL-LVGGLAMHEMDEAFDRPEEVVYVDDNNYNNFDDYG 195
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 432 RGLEYLSMIDQLIMHQKVELL-EAFVGFET-NNKYTVMNSVGQKVYYAIEDNDC 587
R YL + L+ + +++ EA VGF T NN ++ + Q V Y ++D +C
Sbjct: 713 RSFTYLKEDEMLVASVRDDIVSEAVVGFSTDNNGQKILADISQ-VCYCLDDLEC 765
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 264 PGMQHGFQPGFQPGYQPGFAPG 329
PG G PG PG PG APG
Sbjct: 615 PGGMPGAAPGAAPGAAPGAAPG 636
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 273 QHGFQPGFQPGYQPGFAPG 329
Q G PG PG PG APG
Sbjct: 610 QAGGAPGGMPGAAPGAAPG 628
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +3
Query: 279 GFQPGFQPGYQPGFAP---GY--PQPSGYPVPVMQQPG----PQAPGG 395
GF Q G PGFAP G+ PQP+G+ + QQP PQ GG
Sbjct: 110 GFMQPQQTGAIPGFAPQPTGFVQPQPTGF---MSQQPASFMQPQRTGG 154
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 QPLPGMQHGFQPGF--QPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQ 413
QP+ + G QP + G QP PG QP MQ PQ G MPQ
Sbjct: 633 QPMAPQRTGMQPMMPQRTGMQPQM-PGMQQPMAPQRTGMQPMAPQRTGMQPMMPQ 686
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 255 QPLPGMQHGFQP---GFQPGYQPGFAPGYPQPSGYPVPVMQQ 371
QP+ + G QP GFQ P PQ +G+ P+M Q
Sbjct: 456 QPMMPQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQ 497
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 546 VGQKVYYAIEDNDCCTRNCCGPLRPFDMKIMDNFNNEVY 662
+ K++ + ND C+R+ C P D IM F Y
Sbjct: 1177 ISMKIHEFSKSNDFCSRS-CAERYPTDSSIMREFGGSAY 1214
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Frame = +3
Query: 258 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP---VPV-----MQQPGPQAPGG 395
P P Q P + P Q GY P GYP P +QQP PGG
Sbjct: 14 PAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYPAQQPMYVQQPQASDPGG 67
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +3
Query: 288 PGFQPGYQPGFAPGYPQPSGYPV-PVMQQPGPQAPG 392
P P P Y P Y V QQP PQ PG
Sbjct: 180 PAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPG 215
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 78 ELTMSHKPTPYSPNFPASHGYVPPPEGEK 164
E+T+++ S F S+G++P PEG++
Sbjct: 226 EVTINYGSEKGSAEFLFSYGFLPEPEGDR 254
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 645 SCP*FSYRKDVKVRSSFLCSNHYPQSHNKLF 553
S P SYR+ V SS + P HN++F
Sbjct: 557 SPPVVSYRESVSEPSSMTALSKSPNKHNRIF 587
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Frame = +1
Query: 85 QCHINQHHTHQIS-------LQVMDMYLHQKEKSQMKVTPCIL 192
+CH+ Q HQ LQ D HQK S + +T C+L
Sbjct: 232 RCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLL 274
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 96 KPTPYSPNFPASHGYVPPPEGEKPNES 176
KPTP+ + PA V P E KP+ S
Sbjct: 252 KPTPFESHGPAKQISVQPSEHPKPSIS 278
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 645 SCP*FSYRKDVKVRSSFLCSNHYPQSHNKLF 553
S P SYR+ V SS + P HN++F
Sbjct: 557 SPPVVSYRESVSEPSSMTALSKSPNKHNRIF 587
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 148 HQKEKSQMKVTPCILKAAILAHHPLLCHTPAYILGHNPFRACSMGSSQDFN 300
H+ KS +K L++ L H LC+ +I GH +MG + FN
Sbjct: 178 HEYTKSNVKFASKHLQSEALNHLEGLCNHNQFIAGH-----ITMGQEKQFN 223
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 468 IMHQKVELLEAFVGFETNNKYTVMNSVGQKVYYAIED 578
+ H KV+ ++ GF T+++ V ++ +Y I+D
Sbjct: 245 LQHSKVQNVDQKSGFLTSSETDVPKNINDYIYLLIDD 281
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 124 GKFGEYGVGLCDIVNSVS*PFSYI 53
G G G G CD+ + + PF I
Sbjct: 200 GALGRCGTGACDLASKIGIPFDNI 223
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 69 YETELTMSHKPTPYSPNFPAS 131
YE L++S +P+P P+ P+S
Sbjct: 299 YENPLSISSRPSPCCPSTPSS 319
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 312 PGFAPGYPQPSGYPVPVMQQPGPQAPGGWM 401
PG P P P G+ P QP P P G++
Sbjct: 6 PGNPPPPPPPPGFEPP--SQPPPPPPPGYV 33
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG-PQAPG 392
P+PG P P PG P G P P P P PG
Sbjct: 507 PIPGAPG--MPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPG 550
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,649
Number of Sequences: 5004
Number of extensions: 59321
Number of successful extensions: 204
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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