Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d24
         (665 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    36   0.002
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    27   0.53 
CR954257-9|CAJ14160.1|  573|Anopheles gambiae putative esterase ...    26   0.93 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         25   1.6  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         25   1.6  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    25   2.8  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   6.5  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    23   6.5  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    23   6.5  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   8.7  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   8.7  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   8.7  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   8.7  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 258 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP-VPVMQQPGPQAPGGWMNMPQ 413
           P+P M+    PG  PG QPG  P  P   G    P+M QP P  P   M  P+
Sbjct: 225 PMP-MRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPMGGPR 276



 Score = 29.1 bits (62), Expect = 0.13
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +3

Query: 288 PGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGL 419
           PG  PG Q    PG   P     P   QP P  PGG    P G+
Sbjct: 183 PGMPPGPQMMRPPGNVGPPRTGTPT--QPQPPRPGGMYPQPPGV 224



 Score = 27.9 bits (59), Expect = 0.30
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 330 YPQPSGYPVPVMQQPGPQAPGGWMNMPQGLSNCPRGLEYLSMIDQ 464
           YPQP G P+P+  Q  P A  G     Q      +G++   M+ Q
Sbjct: 218 YPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQ 262


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 399 MNMPQGLSN-CPRGLEYLSMIDQ--LIMHQKVELLEAFVG 509
           M++  G S  CP+GLE L + D   L++  K + L  F G
Sbjct: 126 MHLDWGSSRTCPKGLELLQLADNLGLVLLNKADCLPTFKG 165


>CR954257-9|CAJ14160.1|  573|Anopheles gambiae putative esterase
           protein.
          Length = 573

 Score = 26.2 bits (55), Expect = 0.93
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 354 VPVMQQPGPQAPGGWMNMPQGLSNCP 431
           +PV Q P P     W N+ Q  +N P
Sbjct: 545 LPVQQTPNPTRMNLWYNLQQTYANAP 570


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +3

Query: 261 LPGMQHGFQPGFQPGY-QPGFAPG---YPQPS-GYPVPVMQQP 374
           LP  QH   P   P    P +  G   Y QPS  +P P++ QP
Sbjct: 172 LPYPQHVLHPAHHPALLHPAYHTGLHHYYQPSPSHPQPIVPQP 214


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +3

Query: 261 LPGMQHGFQPGFQPGY-QPGFAPG---YPQPS-GYPVPVMQQP 374
           LP  QH   P   P    P +  G   Y QPS  +P P++ QP
Sbjct: 172 LPYPQHVLHPAHHPALLHPAYHTGLHHYYQPSPSHPQPIVPQP 214


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 628 ISKGRKGPQQFLVQQSLSSI 569
           ISKGRK P +  V+++L+++
Sbjct: 918 ISKGRKTPNELTVRRNLATV 937


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 312 PGFAPGYPQPSGYP 353
           P +A  YP P+GYP
Sbjct: 8   PLYASRYPTPNGYP 21


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 312 PGFAPGYPQPSGYP 353
           P +A  YP P+GYP
Sbjct: 8   PLYASRYPTPNGYP 21


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 312 PGFAPGYPQPSGYP 353
           P +A  YP P+GYP
Sbjct: 8   PLYASRYPTPNGYP 21


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +3

Query: 258 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 416
           PL   Q  F  GF     P      P P+  P P M  P     GG +  P G
Sbjct: 561 PLNPAQLRFPAGF-----PNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAG 608


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +3

Query: 27  FYC*F*RQLIYEKGYETELTMSHKPTPYSPNFPASHGYVPP 149
           F+C F   ++        +       P  PNFP    ++PP
Sbjct: 711 FHCHFQFHIVIGMNLVVHIGTHADLPPVPPNFPRCGNHIPP 751


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
 Frame = +3

Query: 324 PGYPQPSGYPVPV--------MQQPGPQAPGGWMNM--PQGLSNCP 431
           PG P P G P           +  PGPQ P G+     P+GL   P
Sbjct: 452 PGRPGPEGMPGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEP 497


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 555 FDQHCS*LCICC 520
           +D HC  LC CC
Sbjct: 736 YDTHCFALCHCC 747


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,430
Number of Sequences: 2352
Number of extensions: 16968
Number of successful extensions: 41
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)