Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d24
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   2.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.6  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   4.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 258  PLPGMQHGFQPGFQPGYQ 311
            PLP ++HG   GF  GY+
Sbjct: 1030 PLPELRHGDIQGFNVGYR 1047


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 258  PLPGMQHGFQPGFQPGYQ 311
            PLP ++HG   GF  GY+
Sbjct: 1026 PLPELRHGDIQGFNVGYR 1043


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 324 PGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 416
           P  PQP   P P     GP  P   +  PQG
Sbjct: 24  PNVPQPGRRPFPTFPGQGPFNPK--IKWPQG 52


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 264 PGMQHGFQPGFQPGYQPGFAPGYP 335
           PGM HG QP    G   G A G P
Sbjct: 327 PGMGHGLQPPDLAGTSQGSA-GLP 349


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 203 SWPTTHSYATPRP 241
           SW  THSY  P P
Sbjct: 227 SWRITHSYFMPDP 239


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 324 PGYPQPSGYPVPVMQQPGPQAP 389
           P  PQP   P P     GP  P
Sbjct: 10  PNVPQPGRRPFPTFPGQGPFNP 31


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 191 SKRLSWPTTHSYATPRPTSWGTTPSGH 271
           ++R+ W   H  A+     +  +P GH
Sbjct: 58  NRRMKWKKEHKMASMNIVPYHMSPYGH 84


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 555 FDQHCS*LCICC 520
           ++ HC  LC CC
Sbjct: 739 YEAHCFALCHCC 750


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 123 PASHGYVPPP 152
           PAS GYV PP
Sbjct: 111 PASPGYVQPP 120


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 476 MHYQLVNHGKVFQTSRAVAEALRH 405
           +HY+    G V+ T   + E  RH
Sbjct: 131 LHYRSKRRGFVYYTMGQIREVARH 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,386
Number of Sequences: 438
Number of extensions: 5108
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)