Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d21
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    28   4.9  
AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical ...    28   4.9  
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +1

Query: 100 NVTLCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 279
           NV +      ++ +M     + Y+ YW   +F   VA+    L T F+T EA   V + +
Sbjct: 344 NVVMWLLVVCIIMFMIIMLLYVYI-YWLRSTF---VAIEERALPTEFET-EASLFVAKQR 398

Query: 280 LFQAMYFSNVLLNYVV 327
            FQ+ Y+   LL+  V
Sbjct: 399 SFQSAYYDPALLDVSV 414


>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 144 HVSHQHGRVGAQR-HVNVRQRSIGKLHFCVGR 52
           HVSH HGR+G  R H   R  + G+ H  + R
Sbjct: 14  HVSHGHGRIGKHRKHPGGRGNAGGQHHHRINR 45


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 469 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNL 633
           SCY +I+ +  + F           KLV  S+    F   L I+ A+VW L N+L
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSL 154


>AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical
           protein Y119C1B.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +1

Query: 46  RLSTDTKVKFPYAALSYINVTLCTYTAMLVGYMATF------NEFEYLQYW 180
           R+ T+T + +    L+   V L  + A+++GY+  F      N+ + L YW
Sbjct: 88  RIRTETDINYTVFNLALTIVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYW 138


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 635  VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 525
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 635  VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 525
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,343
Number of Sequences: 27780
Number of extensions: 298325
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)