Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1d18
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 105 8e-24
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.4
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 4.3
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 4.3
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.3
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 7.5
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 9.9
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 25 9.9
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 25 9.9
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 105 bits (251), Expect = 8e-24
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 3/186 (1%)
Frame = +3
Query: 120 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVS 299
R+A HAG WY ++ L++QL ++ G R +I+PH +Q+
Sbjct: 6 REATHAGSWYLDDTELLTKQLKSFIKNPTPETGK-RFVISPHAGYMYSGKVASQGFQQLD 64
Query: 300 PVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEAT-RQFDRMDEQT 476
++R+F+ GPSHH+ C +S TPL DL +D+ + +L A+ FD M
Sbjct: 65 FSKIQRVFVFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLVASDNSFDSMTLDV 124
Query: 477 DENEHSIEMHLPYIA--KVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLAXPQNLL 650
DE+EHS+EM P +A + + I+PI++G+LT L+ Y+ N
Sbjct: 125 DESEHSLEMQFPLLAFHLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKDESNSF 184
Query: 651 VISSDF 668
VISSDF
Sbjct: 185 VISSDF 190
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 296 QSCGCQTNFHIGSITPRED 352
QSC CQT F I S+ P+ +
Sbjct: 629 QSCACQTLFFICSVVPKTE 647
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 361 ALFRLSTSTRLPSTISPSINKYTRSWRPHVNSIEWT-SRPMKMSTPLKC 504
++F+ S S +L +T+S + Y R +P+ + WT S PM +S C
Sbjct: 622 SMFKSSLS-QLMTTVSSTNVHYIRCIKPNEEKLPWTFSPPMVLSQLRAC 669
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 366 LSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENE 488
L LD + P D+ + QI ++ T D MD+QTD +E
Sbjct: 639 LKPLD-FVKPHSDVFVSHQISSDKNYTDDEDSMDDQTDVDE 678
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -2
Query: 495 WSAHFHRSARPFYRIDVWPP 436
WS +H +P++R+ W P
Sbjct: 245 WSRDWHVCTKPYFRVIAWDP 264
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 435 LEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEE 536
L AT +D DE+ D+ S+E HL K E
Sbjct: 76 LFATAPYDHEDEEADKIYQSVEEHLSKRRKSQRE 109
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = +1
Query: 250 DIPTAALARRTHIDKSVLWLSNEFSYWVHHT-T*GSQDALFRLSTSTRLPSTISPSINKY 426
+IPT+ HI V +LSN F +H A F S S L S Y
Sbjct: 443 NIPTSNTMHERHIRLLVSYLSNRFPILLHFPFLLKKNSAQFAYSHSRALESATLALNQLY 502
Query: 427 TRSWRPHVNSIEW 465
P + W
Sbjct: 503 ELGSNPEYSKYSW 515
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 483 NEHSIEMHLPYIAKVMEEYKTSFTIIP 563
N +++ HLP + +V+ ++ S IIP
Sbjct: 323 NTNNLWFHLPSVKRVVNNHELSMEIIP 349
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Frame = -3
Query: 410 GEIVEGSLVLVERRKSASCDPHVV*WTQYENSFDNHRTDLSICVR 276
G ++ + + + CD +V WT+Y + + C+R
Sbjct: 232 GSVIPATSFIYDFNACVFCDDGLVVWTRYVKKIEMKAVSIEQCLR 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,407
Number of Sequences: 5004
Number of extensions: 57873
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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