Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d18
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...   171   4e-43
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413...    65   6e-11
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177...    29   4.4  
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           29   4.4  
08_02_1193 + 25125419-25126810                                         29   4.4  
09_04_0279 - 16349156-16349788,16352409-16353344                       28   5.9  

>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score =  171 bits (416), Expect = 4e-43
 Identities = 83/184 (45%), Positives = 109/184 (59%), Gaps = 1/184 (0%)
 Frame = +3

Query: 120 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQV 296
           R+A HAG WYT N  +L  +LD WL  A LT  P  RA+IAPH                +
Sbjct: 5   RRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYAFGNI 64

Query: 297 SPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQT 476
            P  + R+F+LGPSHH     CAL+    Y TP+ DL +D ++  EL AT +FD MD   
Sbjct: 65  DPTNISRVFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFMDLSV 124

Query: 477 DENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLAXPQNLLVI 656
           DE EHS+EMHLPY++KV + +     ++PILVG+L  + EA YG +L+ YL  P+N   I
Sbjct: 125 DEAEHSMEMHLPYLSKVFQGHNVK--VVPILVGALNSQNEAMYGQLLSKYLDDPKNFFSI 182

Query: 657 SSDF 668
           SSDF
Sbjct: 183 SSDF 186


>05_03_0442 +
           14040280-14040371,14040449-14040517,14041217-14041329,
           14043110-14043209,14044508-14044682,14044768-14044881,
           14045157-14045287,14048401-14048464,14048585-14048624,
           14049002-14049225,14049634-14049876,14050145-14050313,
           14050569-14050873,14051325-14051511,14051622-14051775,
           14052145-14052207,14052300-14052396,14052500-14052589
          Length = 809

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 165 ELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPSH 341
           +L  +LD WL  A LT  P   A+IAPH                + P  + R+F+LGPSH
Sbjct: 5   KLDEELDGWLRAAGLTKSPDVSAVIAPHAGYSYSGRCAAYAFGNIDPTNISRVFLLGPSH 64

Query: 342 HVRIAGCALSSLDKYQTPLYDLTIDKQ 422
           H     CAL+    Y TP+ DL +D +
Sbjct: 65  HYYTPKCALTRATIYSTPIGDLPVDHE 91



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 588 EKEAKYGAILAPYLAXPQNLLVISSDF 668
           + EA YG +L+ YL  P+N   ISSDF
Sbjct: 93  QNEAMYGQLLSRYLDDPKNFFSISSDF 119


>11_01_0229 -
           1771701-1774164,1774694-1774847,1774980-1775055,
           1775439-1775477,1778516-1778674,1778741-1778851,
           1779014-1779064,1779173-1779256
          Length = 1045

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 422 LFIDGEIVEGSLVLVERRKSASCDPHVV 339
           L ++G + EG L L+E R  A C PHVV
Sbjct: 437 LCLEGRVEEG-LKLIEARWGAGCIPHVV 463


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 504 HLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYG 608
           HLPYI  +M+E      ++P+LV  ++ E  +  G
Sbjct: 382 HLPYIHAIMKETMRMHPVVPLLVPRMSREDASVAG 416


>08_02_1193 + 25125419-25126810
          Length = 463

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 474 TDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAP 623
           T+  E+ +E  LPY+  V++E        PILV     E +A+ G    P
Sbjct: 298 TEMEENDVEK-LPYLQAVVKEVMRLHPAAPILVPHRAEEDDAEIGGYAVP 346


>09_04_0279 - 16349156-16349788,16352409-16353344
          Length = 522

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 351 IAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRM-DEQTDENEHSIEMHLPYIAKV 527
           IAG   SS +  +  + +L    +++A+  AT + DR+   +   NE  I + LPYI  +
Sbjct: 315 IAGGTESSSETIEWAISELLRKPEMFAK--ATEELDRIVGHRRWVNEKDI-LDLPYIEAI 371

Query: 528 MEEYKTSFTIIPILVGSLTPE 590
           ++E      I P+L   L+ E
Sbjct: 372 VKETMRLHPIGPLLAPRLSRE 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,370,405
Number of Sequences: 37544
Number of extensions: 392713
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)