Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d18
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.37 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.65 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.0  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 416 IDGEIVEGSLVLVERRKSASCDPHV 342
           I G+IV G L  V  +  ASC P+V
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNV 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 280  THIDKSVLWLSNEFSYWVHHTT*---GSQDALFRLSTSTRLPSTISPSINKYTRSWRPHV 450
            TH + S L  +  + +WV  +T    G    +  L+ S R+P+ I+   +K+T +++  V
Sbjct: 1236 TH-EASELDKTRRYDFWVTASTNIGEGEASKIVALAPSVRVPAKIASFDDKFTATYKEDV 1294


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 510 PYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAP 623
           P + +V++E+ +     P+L+  LTP +   Y    +P
Sbjct: 868 PNLVEVLDEFPSVRPFAPLLLLHLTPLQPRFYSISSSP 905


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 159 HFRCTNIQHGMLDD 118
           +FRC+N+ H M ++
Sbjct: 443 YFRCSNLNHMMREE 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,387
Number of Sequences: 438
Number of extensions: 4207
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)