Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d17
         (114 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   0.67 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   6.2  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    18   8.2  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 0.67
 Identities = 6/23 (26%), Positives = 11/23 (47%)
 Frame = +2

Query: 23  EPRKGYIPLNTFCHPPVIDFGDW 91
           +P   Y+P   +C+ P   +  W
Sbjct: 247 QPAVPYVPFYRYCYRPYPVYNQW 269



 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 91  PVTKINDRRMTKSVQGYVPFPWFVR 17
           P  ++N+R+   + Q  VP+  F R
Sbjct: 233 PQLEVNERKENLTCQPAVPYVPFYR 257


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 89  SHQNQ*QADDKKCSRVCTLSVVRQEHR 9
           SH+NQ  + D    R+C    +  E R
Sbjct: 191 SHRNQPTSIDLNAVRLCFQVFLEGERR 217


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 7   SRCS*RTTERVHTLEHFLSSACH*FW 84
           ++CS +  E    + HFLS      W
Sbjct: 71  AKCSEKQKEMTKKVIHFLSHNKQQMW 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,201
Number of Sequences: 336
Number of extensions: 358
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 18
effective length of database: 116,537
effective search space used:  2214203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)