Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d17
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    26   0.75 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   2.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    22   9.3  

>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   VDVPDEPRKGYIPLNTFCHPPVIDFGDWALKKE 106
           +  P+E  K  I L+  C+P ++++G   L K+
Sbjct: 41  ISTPEEKTKILISLSMKCYPELVNYGTLDLLKQ 73


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 26  PRKGYIPLNTFCHPPVIDFGDW 91
           P    +P+ TF H PV +  +W
Sbjct: 167 PAASNLPIPTFLHSPVSEKAEW 188


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 56   FCHPPVIDFGDWALKKEK 109
            F H PVID  ++A+   K
Sbjct: 1627 FIHEPVIDVDEFAISSSK 1644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,479
Number of Sequences: 5004
Number of extensions: 6137
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)