Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1d15
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0209 - 23282848-23284110                                         33   0.23 
05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320     31   1.2  
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    29   2.8  
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    29   2.8  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   3.8  
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    29   3.8  
02_04_0377 - 22479800-22479872,22479920-22479981,22480007-224803...    29   5.0  

>05_05_0209 - 23282848-23284110
          Length = 420

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +1

Query: 112 FPYAALSYINVTLCTYTAMLVGY--MATFNEFEYLQYWFLLSFL---MSVALNAPTL-WT 273
           FP A    + V      AML     MAT    E+LQ+WF+LS L   ++VALN   + WT
Sbjct: 235 FPSARARAVAVAGHLNRAMLAALVSMATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWT 294


>05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320
          Length = 627

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +1

Query: 487 TDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKN 666
           TD+ YA    +++L +S   F   + ++CLKT       +F S      I+ ++ WS  N
Sbjct: 22  TDHYYAPLRLILLLILSATCFGSELDVQCLKT-------IFQSVTDPNGILKSS-WSFVN 73

Query: 667 NLTSFYASKFT 699
           N T  Y  KFT
Sbjct: 74  NGTPGYICKFT 84


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 148 LCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTA 276
           L  + A+++G       +    YW LL  L +V LN   +WTA
Sbjct: 50  LNAFGAIVLGAPIGIKYWAATTYWSLLMSLFTVVLNVSAIWTA 92


>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 369 KHHIIQQHVTKVHGLEQLHFVNYFMGFCGFERR 271
           K + I QH+ ++H   +L F+N F+ F G+  R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 228 QQKPVL*IFKFVECCHVSH 172
           +QKPVL  + F+ CCH SH
Sbjct: 97  RQKPVL--YTFINCCHTSH 113


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +1

Query: 511 CYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFM----CALYIMIATVWSLKNNLTS 678
           C++V+ +      T+  G +C K+  +     F   +      LY++   + ++  +L +
Sbjct: 211 CFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKKALYYQVALLYMLARLITNVSQSLIA 270

Query: 679 FYASKFTKYSSGS 717
           FY ++  K +  S
Sbjct: 271 FYVTRDLKMNEYS 283


>02_04_0377 -
           22479800-22479872,22479920-22479981,22480007-22480300,
           22481723-22481825,22481949-22482046
          Length = 209

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 73  TKYTRLSTDTKVKFPYAALSYINVTLCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVAL 252
           T++T++  D   K P +        LC    +   +     + + LQ W L  FL+S+ L
Sbjct: 135 TEFTQMLVDGTTKLPQSLQVRSEPILCLLEMLFFLHPVGSTKEKALQMWTLSLFLLSLVL 194

Query: 253 N 255
           N
Sbjct: 195 N 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,305
Number of Sequences: 37544
Number of extensions: 327272
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)